Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,143,650 A→T 7.5% L45Q (CTG→CAG)  PP_4527 ← DMT superfamily permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,143,6500AT 7.5% 153.0 / 3.4 53L45Q (CTG→CAG) PP_4527DMT superfamily permease
Reads supporting (aligned to +/- strand):  ref base A (24/25);  new base T (2/2);  total (26/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.29e-01

AGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGGGCCTCTGGG  >  NC_002947/5143509‑5143798
                                                                                                                                              |                                                                                                                                                    
aGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACTGC‑GCAATGGCATTGCCGCTGtgctg                                                                                                                                                <  3:235183/148‑1 (MQ=255)
aGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGtgctgc                                                                                                                                               <  5:305451/149‑1 (MQ=255)
  cccTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCtt                                                                                                                                             <  3:291791/149‑1 (MQ=255)
     ttCGGCAATGAACAGAAACTCCACCCCGAACAGCACGCCCGCCACCAGCCCTGTGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGc                                                                                                                                           >  7:277621/1‑148 (MQ=255)
         gCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCAc                                                                                                                                      >  3:304146/1‑149 (MQ=255)
              gAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGACCTGCGCGCCAGGTGCTGCCGACATGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGgcg                                                                                                                                 >  6:3302/1‑149 (MQ=255)
                aCAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGTCATTG‑CGCAGTGCTGCTTGCATCACCGgcgc                                                                                                                                <  4:28595/148‑1 (MQ=255)
                 cAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGa                                                                                                                              >  2:42854/1‑149 (MQ=255)
                   gAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATg                                                                                                                            >  8:216844/1‑149 (MQ=255)
                          cACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGAcgg                                                                                                                     >  3:301841/1‑149 (MQ=255)
                                     gcccgcccGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCTGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTg                                                                                                          <  1:42854/149‑1 (MQ=255)
                                     gcccgcccGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTg                                                                                                          <  4:304146/149‑1 (MQ=255)
                                        cgcccgccACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATc                                                                                                       <  3:131056/149‑1 (MQ=255)
                                         gcccgccACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCa                                                                                                      <  7:216844/149‑1 (MQ=255)
                                         gcccgccACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCa                                                                                                      <  2:207662/149‑1 (MQ=255)
                                                    gCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCa                                                                                                      >  3:70128/1‑138 (MQ=255)
                                                    gCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCa                                                                                                      <  4:70128/138‑1 (MQ=255)
                                                          cgcgcCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTCCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGccc                                                                                     >  8:285666/1‑149 (MQ=255)
                                                                  gTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAg                                                                             <  3:56020/149‑1 (MQ=255)
                                                                       gctgACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCa                                                                          >  8:43463/4‑147 (MQ=255)
                                                                         cGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAgg                                                                      >  6:325679/1‑149 (MQ=255)
                                                                            ccTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGcc                                                                    >  1:293601/1‑148 (MQ=255)
                                                                             cTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCa                                                                  <  1:288734/149‑1 (MQ=255)
                                                                                           cccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTAcc                                                          <  3:166669/143‑1 (MQ=255)
                                                                                           cccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTAcc                                                          >  4:166669/1‑143 (MQ=255)
                                                                                           cccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAg                                                    >  7:74038/1‑149 (MQ=255)
                                                                                            ccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCt                                                         >  6:295351/1‑143 (MQ=255)
                                                                                            ccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCt                                                         <  5:295351/143‑1 (MQ=255)
                                                                                             cGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAgg                                                   >  7:10920/1‑148 (MQ=255)
                                                                                                     cagcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGt                                          <  5:325679/149‑1 (MQ=255)
                                                                                                     cagcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGt                                          <  5:3302/149‑1 (MQ=255)
                                                                                                     cagcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGt                                          >  4:297495/1‑149 (MQ=255)
                                                                                                      agcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CTCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGt                                                                                                    <  5:201213/90‑1 (MQ=255)
                                                                                                      agcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTc                                         <  8:277621/149‑1 (MQ=255)
                                                                                                      agcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CACAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGt                                                                                                    >  6:201213/1‑90 (MQ=255)
                                                                                                        caTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTg                                       >  6:294423/1‑149 (MQ=255)
                                                                                                          tCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTggg                                     >  5:236964/1‑149 (MQ=255)
                                                                                                            aGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGt                                    <  4:301841/148‑1 (MQ=255)
                                                                                                               ccTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCtt                                >  5:197852/1‑149 (MQ=255)
                                                                                                                     aGCACTGC‑GCAATGGCATTGCCGCTGTGCTGCTTGCATCACCGGCGCGATGTCGACGTCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGAc                          >  2:158525/1‑149 (MQ=255)
                                                                                                                     aGCACTGC‑GCAATGGCATTGCCGCTGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTgg                                                                                           >  4:285695/1‑84 (MQ=25)
                                                                                                                     aGCACTGC‑GCAATGGCATTGCCGCTGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTgg                                                                                           <  3:285695/84‑1 (MQ=25)
                                                                                                                      gCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGAcc                         >  7:253188/1‑149 (MQ=255)
                                                                                                                      gCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGAcc                         <  7:285666/149‑1 (MQ=255)
                                                                                                                      gCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGAcc                         <  3:297495/149‑1 (MQ=255)
                                                                                                                       cacaGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGGAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACcg                        <  8:253188/149‑1 (MQ=255)
                                                                                                                       cacaGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACcg                        <  8:10920/149‑1 (MQ=255)
                                                                                                                        acaGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACcgc                       >  5:125780/1‑149 (MQ=255)
                                                                                                                           gCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCgcgc                     >  3:149325/1‑148 (MQ=255)
                                                                                                                                    ccATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCgg           >  3:285919/1‑149 (MQ=255)
                                                                                                                                      aTTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGGGc         <  2:106560/149‑1 (MQ=255)
                                                                                                                                         g‑cgcAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGGGCct       <  4:285919/148‑1 (MQ=255)
                                                                                                                                            gcAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGGGCCTCTg    <  8:74038/149‑1 (MQ=255)
                                                                                                                                              aGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGGGCCTCTggg  <  6:125780/149‑1 (MQ=255)
                                                                                                                                              aGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGGGCCTCTggg  <  4:149325/149‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                    
AGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGGGCCTCTGGG  >  NC_002947/5143509‑5143798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑