Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,148,213 | C→A | 9.1% | intergenic (+16/+57) | mscMB → / ← PP_5695 | miniconductance mechanosensitive channel protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,148,213 | 0 | C | A | 9.1% | 162.6 / 6.1 | 55 | intergenic (+16/+57) | mscMB/PP_5695 | miniconductance mechanosensitive channel protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (23/27); new base A (3/2); total (26/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 |
GCGGTGTTGCCGGAGTTCGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGTGCGAAGCCCAGATTAGCT > NC_002947/5148069‑5148355 | gCGGTGTTGCCGGAGTTCGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTg < 2:190248/148‑1 (MQ=255) cGGTGTTGCCGGAGTTCGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCa < 6:107607/149‑1 (MQ=255) cGGTGTTGCCGGAGTTCGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCa < 5:248081/149‑1 (MQ=255) ttGCCGGAGTTGGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGccc < 4:43046/148‑1 (MQ=255) gCCGGAGTTCGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCAAGGCAGccccg < 6:251392/148‑2 (MQ=255) gCCGGAGTTCGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGAGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTAGCAGCCCCt > 8:71808/1‑148 (MQ=255) ggAGTTCGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCAGGGGCTGCAAGGCAGccccggcaa > 3:131778/1‑144 (MQ=17) cGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTa > 4:176934/1‑141 (MQ=255) cGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTa < 3:176934/141‑1 (MQ=255) cTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGc > 5:6984/1‑149 (MQ=255) cTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGccc < 1:328213/127‑1 (MQ=255) cTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTg > 4:214832/1‑149 (MQ=255) tATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCaa < 3:316259/149‑1 (MQ=255) gcCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGcc > 7:43553/1‑107 (MQ=255) gcCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGcc < 8:43553/107‑1 (MQ=255) tGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGgat < 1:9524/149‑1 (MQ=255) aaTGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGatgatg < 7:71808/149‑1 (MQ=255) aaTGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGatgatg < 7:58442/149‑1 (MQ=255) aTGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGtt > 3:25875/1‑148 (MQ=255) gcgcGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGcggcgg > 8:115236/1‑134 (MQ=255) gcgcGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGcggcgg < 7:115236/134‑1 (MQ=255) cgcgTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTa < 5:179079/147‑1 (MQ=255) cgcgTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTa > 6:179079/1‑147 (MQ=255) gcgTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAgg > 7:20525/1‑149 (MQ=255) gggTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGttt > 8:149727/1‑149 (MQ=255) ggTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATgg > 6:250102/1‑134 (MQ=255) gTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTtc < 6:6984/149‑1 (MQ=255) gCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTtcatc < 7:149727/148‑1 (MQ=255) ggCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGcc < 7:157085/149‑1 (MQ=255) ggcggcggAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAgggg > 8:55452/1‑129 (MQ=255) ggcggcggAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAgggg < 7:55452/129‑1 (MQ=255) gcggcggAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAg > 3:203795/1‑149 (MQ=255) gcggAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGAAGATGGTGATTAAGGGGTGTTCATCATGACAAATTCAGca > 8:225957/1‑148 (MQ=255) ggAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGcatca > 7:220465/1‑149 (MQ=255) cgcgACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAgcgc > 4:319962/1‑149 (MQ=255) cacCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTgg < 4:25875/149‑1 (MQ=255) ttGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGcc > 5:251269/1‑147 (MQ=255) ttGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGcc > 3:57887/1‑147 (MQ=255) aagaaATGATAGAGGCATGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGACAAGGCCGCTCTGCAAAGGATCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCtttg < 7:308800/142‑3 (MQ=255) aagaaATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTTCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGTGATGATGGTGTTTAAGGTGTTTTCATCATGCCCAATACAGCATCATCCATAAGAGCCTTgt > 8:308800/1‑141 (MQ=255) agaaATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGc > 5:126848/1‑148 (MQ=255) gaaATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGca > 4:126205/1‑148 (MQ=255) aaTGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACag < 7:225957/149‑1 (MQ=255) aTGCGCGCGGCCTGTGTATGCCGGGGCTGGCGTGCAGCCCCTTACGACCCAACGCCGCTCTGCAAAGGCGCGGCGGGCTGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACaga < 4:203795/149‑1 (MQ=255) gAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGt < 3:126205/149‑1 (MQ=255) gAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGt < 4:57887/149‑1 (MQ=255) tGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGcac > 7:131641/1‑134 (MQ=255) tGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGcac < 8:131641/134‑1 (MQ=255) tGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGTGCGAAg > 1:80675/1‑149 (MQ=255) gagaTTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTtcat < 3:167364/89‑1 (MQ=255) tcgtaaggggCTGCAAGGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGATAGTGCGaa > 3:14786/7‑144 (MQ=255) tcgtaaggggCTGCAAGGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGATAGTGCGaa < 4:14786/138‑1 (MQ=255) aTTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGTGCGAAGCCCa < 6:126848/149‑1 (MQ=255) ttGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGTGCGAAGCCCAg < 6:251269/149‑1 (MQ=255) aggggCTGCAAGGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGTGCGAAGCCCAGAt > 8:91115/2‑147 (MQ=255) tGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGTGCGAAGCCCAGATTAGCt < 2:315185/146‑1 (MQ=255) tGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGTGCGAAGCCCAGATTAGCt > 1:315185/1‑146 (MQ=255) | GCGGTGTTGCCGGAGTTCGGCTTGAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGTACGGCGGCGGAGCCGATGCCGCGACACCTTGAAGAAATGAGCGAGGCCTGAGATTGCCGGGGCTGCCTTGCAGCCCCTTACGAGCCAAGGCCGCTCTGCAAAGGAGCGGCGGGATGATGGTGTTTAAGGGGTTTTCATCATGCCCAATTCAGCATCATCCATCAGCGCCTTGGCCAAGGCACAGAGGTAGTGCGAAGCCCAGATTAGCT > NC_002947/5148069‑5148355 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |