| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,149,441 | C→G | 10.7% | intergenic (‑427/+21) | PP_mr51 ← / ← PP_4535 | C4 ncRNA/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,149,441 | 0 | C | G | 10.7% | 159.3 / 10.5 | 56 | intergenic (‑427/+21) | PP_mr51/PP_4535 | C4 ncRNA/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (26/24); new base G (3/3); total (29/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.32e-01 | |||||||||||
CGCGTCTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTCCT > NC_002947/5149298‑5149589 | cgcgTCTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATccccccc > 1:269635/1‑149 (MQ=255) cTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATcc < 1:156263/139‑1 (MQ=255) cTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATcc > 2:156263/1‑139 (MQ=255) tGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTg > 4:2971/1‑148 (MQ=255) gAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGGGGGGATAGCCTCCTGGtt < 4:43743/146‑1 (MQ=255) gAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGtt < 5:103407/146‑1 (MQ=255) gAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTgg < 5:200044/148‑1 (MQ=255) gAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTgg > 3:278660/1‑148 (MQ=255) tgCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGGGGGGATAGCCTCCTGGTTg > 8:106799/1‑138 (MQ=39) tgCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGGGGGGATAGCCTCCTGGTTg < 7:106799/138‑1 (MQ=39) ttCTGAATGCCCCCGAGCAATCCGCCCCATAAGACATAATGTGGCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGGGGCCCAGCCACTCCTCATCCACGTTCCAACCAGGAGGCTAACCCCCCCAGGATGGACCGTCAGTGAcgc > 7:304907/1‑147 (MQ=255) ttCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGGGGGGATAGCCTCCTGGtt < 1:144109/133‑1 (MQ=39) ttCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGGGGGGATAGCCTCCTGGtt > 2:144109/1‑133 (MQ=39) tGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAACCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCATGGTTGGAACTTCAGTTACTCgg > 3:107248/1‑148 (MQ=255) aaTGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGc < 8:13479/147‑1 (MQ=255) tGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATc < 3:2971/149‑1 (MQ=255) aCCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAAt > 6:322474/1‑146 (MQ=255) cACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGAc > 3:151038/1‑149 (MQ=255) aCGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGAcc < 5:322474/149‑1 (MQ=255) gAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCAAAGCCAATCCTCATCCAAGTTCCAACCAGGAGCCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACcgc > 7:5205/1‑149 (MQ=255) aaTCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGt > 1:165419/1‑149 (MQ=255) aTCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGtt < 2:165419/149‑1 (MQ=255) tCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGt < 2:181034/124‑1 (MQ=255) tCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGt > 1:181034/1‑124 (MQ=255) gACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTtctc > 7:248798/1‑148 (MQ=255) tCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTc > 3:5523/1‑148 (MQ=255) tCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTc < 4:5523/148‑1 (MQ=255) cccgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACa > 4:181153/1‑149 (MQ=255) tatCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTAGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGc > 5:128391/1‑149 (MQ=255) atCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAAGCTGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATATTTGcc < 8:52370/149‑1 (MQ=255) ttGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAAGCTGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTcc < 6:195366/129‑1 (MQ=255) ttGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCAAAGTTCCAACCAGGAGGCTATACCCCCCTGGTTGGAACTTAAGTTACTAGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTcc > 5:195366/1‑129 (MQ=255) aaCTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCa < 8:5205/149‑1 (MQ=255) aaCTGCAGTGTCCCAGCCAATCCTCATCCAACTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCa < 4:107248/149‑1 (MQ=255) cAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTcc < 1:287826/109‑1 (MQ=255) cAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTcc > 2:287826/1‑109 (MQ=255) cAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGt > 3:58593/1‑149 (MQ=255) cAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGt > 3:54245/1‑149 (MQ=255) aaGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTg > 8:218710/1‑149 (MQ=255) gCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGAt < 4:151038/149‑1 (MQ=255) cAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAAGTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCaa < 2:250279/127‑1 (MQ=255) cAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCGTCGAAGACATAGTTGCCCTGCaa > 1:250279/1‑127 (MQ=255) aaTCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAg < 8:36423/115‑1 (MQ=255) aaTCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAg > 7:36423/1‑115 (MQ=255) aaTCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCg > 6:30582/1‑148 (MQ=255) aTCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATa > 3:272584/1‑107 (MQ=255) aTCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATa < 4:272584/107‑1 (MQ=255) aTCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAg > 4:222669/1‑125 (MQ=255) aTCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAg < 3:222669/125‑1 (MQ=255) aTCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGcc > 3:147678/1‑128 (MQ=255) aTCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGcc < 4:147678/128‑1 (MQ=255) aTCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACaa < 4:278660/148‑1 (MQ=255) ttCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTAGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGc < 6:128391/149‑1 (MQ=255) ccAACCAGGAGGCTATCCCCCCCTGGTTGAAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCgg > 4:112932/1‑149 (MQ=255) aaCCAGGGGGGGATAGCCTCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCt > 2:123493/1‑149 (MQ=255) aaCCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCt < 8:248798/149‑1 (MQ=255) gCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCgg < 4:58593/149‑1 (MQ=255) gCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCgg < 4:54245/149‑1 (MQ=255) tCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTc > 6:323241/1‑149 (MQ=255) ccccccTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTCCt > 2:128574/1‑149 (MQ=255) | CGCGTCTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCAGGAGGCTATCCCCCCCTGGTTGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTCCT > NC_002947/5149298‑5149589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |