Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,212,488 | C→A | 7.9% | intergenic (+52/+42) | PP_4593 → / ← PP_4594 | hypothetical protein/cystathionine gamma‑synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,212,488 | 0 | C | A | 7.9% | 150.7 / 4.2 | 51 | intergenic (+52/+42) | PP_4593/PP_4594 | hypothetical protein/cystathionine gamma‑synthase |
Reads supporting (aligned to +/- strand): ref base C (22/25); new base A (2/2); total (24/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.00e-01 |
CACCAACGACGAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGA > NC_002947/5212346‑5212627 | cACCAACGACGAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACcgtcg > 4:147542/1‑148 (MQ=255) ccAACGACGAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAg < 3:147542/149‑1 (MQ=255) aaCGACGAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAg > 1:286434/1‑147 (MQ=255) aaCGACGAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAg > 4:299851/1‑147 (MQ=255) cgacgaAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑Gc < 2:286434/149‑1 (MQ=255) gacgaAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCCTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCg > 4:47321/1‑149 (MQ=255) acgaAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGACGGTGTAGGA‑GCgg < 2:212576/149‑1 (MQ=255) acgaAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCgg < 5:268045/149‑1 (MQ=255) acgaAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCgg < 3:299851/149‑1 (MQ=255) ccGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTAc < 2:185938/149‑1 (MQ=255) aaCCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCcgc > 5:21979/1‑148 (MQ=255) ccTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCCTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAgg < 3:47321/149‑1 (MQ=255) gcAAGGAAAGATTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAACCCGCTCCTACGACGGTGTAGGA‑GCGGGcttg < 7:37352/133‑2 (MQ=37) gcAAGGAAAGATTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAACCCGCTCCTACGACGGTGTAGGA‑GCGGGcttg > 8:37352/1‑132 (MQ=37) aaGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCg > 8:123957/1‑149 (MQ=255) aaGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCt < 8:12289/149‑1 (MQ=255) gTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTcac < 2:283241/149‑1 (MQ=255) ttGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTAc < 5:50136/123‑1 (MQ=255) ttGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTAc > 6:50136/1‑123 (MQ=255) tGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGc > 6:253936/1‑149 (MQ=255) tCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCgcc > 4:222819/1‑147 (MQ=255) aaGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCa < 7:123957/149‑1 (MQ=255) cAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCt > 4:233573/1‑149 (MQ=255) cAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCt < 7:75610/149‑1 (MQ=255) cAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCt > 6:210027/1‑149 (MQ=255) aGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCttt > 3:62575/1‑149 (MQ=255) tCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGACGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTc < 1:86590/148‑1 (MQ=255) gAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCTGCCCTCACACAGCGACCAGCGCTTTCAACg > 1:266362/1‑149 (MQ=255) aaCGGATCATTCATCCGCCCAAATCCTGACAGCCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGc > 1:207150/1‑149 (MQ=255) attcatCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATcc < 6:21979/148‑1 (MQ=255) ttcatCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAg < 3:233573/149‑1 (MQ=255) cccAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGa < 5:136923/149‑1 (MQ=255) ccAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGAc > 7:136589/1‑149 (MQ=255) cAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGAc > 8:48455/1‑148 (MQ=255) aaTCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATccc > 2:168914/1‑149 (MQ=255) aTCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCt < 5:251682/149‑1 (MQ=255) aTCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCt < 1:168914/149‑1 (MQ=255) tCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAg < 6:312737/114‑1 (MQ=255) tCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAg > 5:312737/1‑114 (MQ=255) aCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGGTGTCAACGCCCCAGCCAGGTCCTCGACCAGGTCCGGGGACTCGTCGATCGCTACCg > 8:118115/1‑149 (MQ=37) ccGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGa < 2:207150/149‑1 (MQ=255) ttCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGa > 3:219635/1‑141 (MQ=255) ttCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGa < 4:219635/141‑1 (MQ=255) ttCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCg > 7:125355/1‑147 (MQ=255) cgcgGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCTTCGATCCCTACCGACAACCgca < 7:48455/147‑1 (MQ=255) cgcgGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCgca < 3:280322/147‑1 (MQ=255) aGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTc < 5:141054/119‑1 (MQ=255) aGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTc > 6:141054/1‑119 (MQ=255) cccGCTCCTACGACGGTGTAGGA‑GCGGGCTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGc > 4:274130/1‑149 (MQ=39) agCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCAAGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTg < 5:210027/148‑1 (MQ=255) gCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGa < 5:253936/149‑1 (MQ=255) | CACCAACGACGAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACACCGTCGTAGGA‑GCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGA > NC_002947/5212346‑5212627 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |