Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,485,335 | C→G | 7.4% | P32R (CCG→CGG) | purD → | phosphoribosylamine‑‑glycine ligase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,485,335 | 0 | C | G | 7.4% | 162.8 / 3.2 | 54 | P32R (CCG→CGG) | purD | phosphoribosylamine‑‑glycine ligase |
Reads supporting (aligned to +/- strand): ref base C (27/23); new base G (2/2); total (29/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.07e-01 |
TCCCACAGTGTTCGGCGCAAGCCACGGGATCACTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTATCGGTGTGGTCGAC > NC_002947/5485190‑5485483 | tCCCACAGTGTTCGGCGCAAGCCACGGGATCACTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCggg > 2:190024/1‑149 (MQ=255) caGTGTTCGGCGCAAGCCACGGGATCACTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCgg > 5:219667/1‑143 (MQ=255) caGTGTTCGGCGCAAGCCACGGGATCACTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCgg < 6:219667/143‑1 (MQ=255) gtgtTCGGCGCAAGCCACGGGATCACTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCGGGGCAACgaa < 6:73299/149‑3 (MQ=255) gtgtTCGGCGCAAGCCACGGGATCACTTGAATCGACGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGcc < 6:317114/149‑1 (MQ=255) gcAAGCCACGGGATCACTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGAGTCGAGAAATTATTCCTTGCCCCGGGCAACGCCGGTACCGc > 5:191581/1‑148 (MQ=255) cGGGATCACTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGc < 4:314698/149‑1 (MQ=255) cTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCgg < 8:28474/116‑1 (MQ=255) cTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCgg > 7:28474/1‑116 (MQ=255) ttGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCGGGGCAACgaa > 2:90319/1‑121 (MQ=255) ttGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGcc < 7:149810/141‑1 (MQ=255) ttGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGcc > 8:149810/1‑141 (MQ=255) ttGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGc > 5:7583/1‑147 (MQ=255) ttGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGc > 2:41078/1‑147 (MQ=255) gAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCgag < 8:197642/148‑1 (MQ=255) tCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACg > 6:120153/1‑149 (MQ=255) gAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTc < 5:120153/149‑1 (MQ=255) gACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGa > 4:296877/1‑149 (MQ=255) aCATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGAc > 4:136807/1‑149 (MQ=255) aTGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGa > 6:120550/1‑119 (MQ=255) aTGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGa < 5:120550/119‑1 (MQ=255) aTGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACgt > 3:43975/1‑149 (MQ=255) gAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAAc > 4:253983/1‑133 (MQ=255) gAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAAc < 3:253983/133‑1 (MQ=255) gAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACgtgt > 6:63959/1‑149 (MQ=255) gAAAGTTTTGATCATCGGCAGCGGTGGACGTGAGCACGCCCTGGCCTGGAAAGTACCCCAGGACCCAAGCGTAGAGAAAGTCATACTTTCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAAAGTACCCATAGaactgt > 1:9762/1‑144 (MQ=255) aaaGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACgtgt < 3:296877/148‑1 (MQ=255) ttGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGccc < 6:7583/148‑1 (MQ=255) atcatcGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGa < 2:230263/149‑1 (MQ=255) gCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTg < 1:41078/149‑1 (MQ=255) gCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGcc < 2:9762/149‑1 (MQ=255) cGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGcc > 5:171448/1‑148 (MQ=255) cGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGc > 6:224131/1‑149 (MQ=255) gCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGaaaaa > 5:145864/1‑149 (MQ=255) cctggcctggAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAAc < 1:57964/148‑1 (MQ=255) cctggcctggAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAAc > 2:57964/1‑148 (MQ=255) ctggcctggAAAGTCTCCCAGGACCAAAGAGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCTGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGACGACTTCGCCGAGAAAAACGt < 6:191581/149‑1 (MQ=255) gcctggAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTc < 4:43975/147‑1 (MQ=255) gcctggAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGa < 6:171448/149‑1 (MQ=255) ctggAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGAcc > 2:286860/1‑149 (MQ=255) tggAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCt > 6:192683/1‑149 (MQ=255) gcgcAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCAtcgt < 4:216008/146‑1 (MQ=255) gCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGAGAGAACGTCGCCATCGACGTGAGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCCACCTGACCAtcga > 7:37026/1‑148 (MQ=255) ccACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCgg > 5:56803/1‑148 (MQ=255) cACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGaa < 5:192683/149‑1 (MQ=255) agaAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTg > 6:287169/1‑149 (MQ=255) aGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTa < 3:268762/149‑1 (MQ=255) aGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTa > 4:108196/1‑149 (MQ=255) gTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTAt > 2:47236/1‑149 (MQ=255) cggcGTTGCCCGGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTg > 6:274303/4‑142 (MQ=255) cggcGTTGCCCGGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTg < 5:274303/139‑1 (MQ=255) gTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTATCGgtgt > 8:218468/1‑149 (MQ=255) gTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTATCGgtg < 5:63959/148‑1 (MQ=255) ttGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTATCGGtgtg < 1:190024/149‑1 (MQ=255) cGGGCAACGCCGGTAGCGGCATTTAAGCCAAGTGCGAGATCGTCGACATCGACGTGTTCGCCCTGGAGCAATTGGCCGACTTCGCCgaga < 4:96314/90‑1 (MQ=255) cGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCgaga < 6:272986/90‑1 (MQ=255) cGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCgaga > 3:96314/1‑90 (MQ=255) cGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCgaga > 5:272986/1‑90 (MQ=255) cGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTATCGGTGTGGTCGAc < 1:47236/149‑1 (MQ=255) | TCCCACAGTGTTCGGCGCAAGCCACGGGATCACTTGAATCGAGGTTTTGACATGAAAGTTTTGATCATCGGCAGCGGTGGCCGTGAGCACGCCCTGGCCTGGAAAGTCGCCCAGGACCCACGCGTCGAGAAAGTCTTCGTTGCCCCGGGCAACGCCGGTACCGCCATTGAAGCCAAGTGCGAGAACGTCGCCATCGACGTGTGCGCCCTGGAGCAATTGGCCGACTTCGCCGAGAAAAACGTCGACCTGACCATCGTCGGCCCGGAAGCACCGCTGGTTATCGGTGTGGTCGAC > NC_002947/5485190‑5485483 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |