Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,737,602 | G→C | 10.9% | intergenic (‑157/+45) | hutU ← / ← PP_5034 | urocanate hydratase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,737,602 | 0 | G | C | 10.9% | 146.2 / 5.0 | 52 | intergenic (‑157/+45) | hutU/PP_5034 | urocanate hydratase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (20/25); new base C (4/2); total (25/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.02e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGAACAACCC > NC_002947/5737459‑5737742 | tGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGggcggc > 6:222060/1‑149 (MQ=255) tGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTAATGTTGGGGTATAGATCGAGCGCCGCGCGggcggc > 7:137999/1‑149 (MQ=255) gtcgtcCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTc > 7:83775/1‑149 (MQ=255) gtcgtcCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTc < 5:222060/149‑1 (MQ=255) gtcCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGa < 1:22007/148‑1 (MQ=255) gtcCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTAATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGAt < 8:137999/149‑1 (MQ=255) gtcCGCGGGCGGGTATGTCGTGCTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGAAAAACAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCTAGCGCCGCCCGCGCGGCGCTCGAt < 2:142722/149‑1 (MQ=255) cgcgGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGAtc‑t > 6:261732/1‑148 (MQ=255) tGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCaa > 6:184996/1‑148 (MQ=255) gTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGCGCGGCGCTCGATC‑TCACAGGCGCCAAAAATc > 5:56011/1‑149 (MQ=255) tGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCaaaaa < 4:195090/146‑1 (MQ=255) tGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCaaaaa > 3:195090/1‑146 (MQ=255) gTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTa < 1:139837/148‑1 (MQ=255) gTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTa < 1:144758/148‑1 (MQ=255) aCAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCt > 4:129269/1‑115 (MQ=255) cacacCTTTACTTGTATGTACAAGCATGGACAACCAAAATAAACGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCtt > 6:150847/1‑147 (MQ=255) acCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAgcg > 7:111038/1‑149 (MQ=255) acCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAgcg < 8:111038/149‑1 (MQ=255) cTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGcc > 4:195993/1‑149 (MQ=255) tACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGccc < 5:311827/147‑1 (MQ=255) cTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATc > 2:305745/1‑148 (MQ=255) cTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATc < 1:305745/148‑1 (MQ=255) cTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCa < 8:83775/149‑1 (MQ=255) gtatgtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACATGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGt > 5:236916/1‑149 (MQ=255) atgtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACATGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGtt < 6:236916/148‑1 (MQ=255) tgtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTc > 3:209732/1‑148 (MQ=255) taCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGa < 3:195993/148‑1 (MQ=255) taCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGAt < 6:56011/149‑1 (MQ=255) aCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGAt > 2:12875/1‑148 (MQ=255) aCAAGCATGGACAACCAAAATAATCCGACAATACCGTTCCTGCCTTCAGATTTATGTTGGGTTATAGATCCAGCTCCACGCGCGCGTCGCTCCATA‑TCACATGCGCCAAAAATATACAGCCGAACCTTCAGCGCCCATCAAGTTCGAt > 2:25479/1‑148 (MQ=255) cAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATc < 5:261732/148‑1 (MQ=255) cAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATc < 6:305717/148‑1 (MQ=255) aaGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAg > 3:57892/1‑149 (MQ=255) gACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTCGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCAc > 3:68993/1‑149 (MQ=255) aaCCCAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGCGGTATAGATCGAGCGCCCCGCGTGCGGCGCTCGAAC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGAGCACATCAACTTCGAACAGGCAGCACCGc > 5:314310/1‑149 (MQ=255) aaCCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGgcag > 1:220914/1‑143 (MQ=255) aaCCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGgcag < 2:220914/143‑1 (MQ=255) cAAAATAATCGTACCTTACCGATACTGGCTTGAGATTTATGTTGGCGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGcccc > 2:287408/1‑149 (MQ=255) aaaaTAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAgg < 5:82928/136‑1 (MQ=255) aaaaTAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAgg > 6:82928/1‑136 (MQ=255) aaaTAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTg < 4:209732/149‑1 (MQ=255) ataatCGGACCTTACCGTTCCTGGCTTGAGATTTATGTCGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGca < 4:68993/149‑1 (MQ=255) gACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAg < 5:184996/149‑1 (MQ=255) gACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTACGATCAGCCAGCACAGCCCCTGCACAACCAg > 6:58536/1‑149 (MQ=255) tGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTTGACCGGCGCCAAAAATGTACAGCCGAACCTTCAGCGCCCATAAATTTCGAACAGGCAGCCCCGCCCCTGCAAAACCACCCCCAGCAATtca > 1:90564/1‑149 (MQ=255) agaTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGc < 4:57892/148‑1 (MQ=255) aTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCtt < 1:12875/149‑1 (MQ=255) ttATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCATAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTc < 5:58536/148‑1 (MQ=255) gATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTc < 1:287408/148‑1 (MQ=255) gATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTc < 5:150847/148‑1 (MQ=255) gATCGAGCGCCGCCCGCGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTc > 6:316485/1‑148 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTg < 7:101177/126‑1 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTg > 8:101177/1‑126 (MQ=255) ccgcGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCACCCCCACCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGAACAAccc > 6:58117/1‑148 (MQ=255) | TGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATC‑TCACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGAACAACCC > NC_002947/5737459‑5737742 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |