| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,740,484 | T→C | 14.7% | intergenic (+49/+22) | hutF → / ← PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,740,484 | 0 | T | C | 14.7% | 72.5 / 6.5 | 34 | intergenic (+49/+22) | hutF/PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (12/17); new base C (2/3); total (14/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.94e-01 | |||||||||||
ATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCGGTGTGCGCGA > NC_002947/5740337‑5740631 | aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGtt < 3:157541/149‑1 (MQ=255) tGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTg > 8:150704/1‑149 (MQ=255) gTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGC‑GGGCTTGCACGCGAAGGGCTgc < 8:173354/148‑1 (MQ=38) aaTGGGCAATGGGGGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTgcaac < 7:150704/148‑1 (MQ=255) tgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTTGAGGCCCTAGC‑CGGGGAGCCCGCGAAGGGTTTGAACCGCACCCCaaaaaaaa > 2:276589/1‑146 (MQ=255) ccAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGGGGTTGC‑GCCCATAGCGGGGCAAGCCCCGCACGGGTTGGAACCCCACCCCaaaaaaaacctg > 3:315022/1‑143 (MQ=255) aaGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTG‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgc < 3:81467/149‑1 (MQ=255) gcgggcgTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCa < 8:238596/149‑1 (MQ=255) ttGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTc < 1:16493/148‑1 (MQ=255) cgcCAGGTTTTGGGCGGAGGGTACCGGGGTG‑GCGTTGCAGCCGTGGGC‑GTGCAAGCCGGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGTCGCCCGCCAGATCAAGCGGCTGGTGTCATa < 1:196623/148‑1 (MQ=255) ccAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTAGC‑GGGCAAGCCCGCGAAGGGTTGGCACGCCACCCCCAAAAACGCAGTGGATTTTTTCGATTTGCGGATCGGACGCCCGCCAGATCAAGCGGCGGGGGTCATAacc > 2:45521/1‑149 (MQ=255) cAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTgc > 2:316016/1‑67 (MQ=255) aGCTTTTGGGCTGAGCGTACCGGGGTG‑GCGTTCCAGCCCGTCGC‑GGCCAAGCCCGCGAAGGGTGGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCct < 4:304944/149‑1 (MQ=255) ttttGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCACATCAAGCGGCTGGTGTCATACCCctgct < 1:187067/149‑1 (MQ=255) ttGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct < 2:259385/147‑1 (MQ=255) aGCGTACCGGGGTG‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGATGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt < 4:315022/149‑1 (MQ=255) gCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTg < 1:45521/149‑1 (MQ=255) gtt‑gcgttgcAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGt > 2:127446/1‑149 (MQ=255) ttgcAACCCTTCGC‑GGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc > 5:120314/1‑149 (MQ=38) cAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGAAACCCCAAAAAACTCAGTGCAATTTTACTATTTGAAGAACGTACTCACGCAAGATAAAGCGGCTGGTGTCATACCCCTTCTGCCGCGCACTCGACAGCAGGTTCTCACGCt > 6:125138/1‑149 (MQ=255) gCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGCTCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc > 8:188150/1‑149 (MQ=255) cTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg > 4:231948/1‑149 (MQ=255) cTTCGC‑GGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc > 5:128440/1‑117 (MQ=38) cTTCGC‑GGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc < 6:128440/117‑1 (MQ=38) ttCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg > 3:6168/1‑149 (MQ=255) tCGC‑GGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt < 5:104851/122‑1 (MQ=255) tCGC‑GGGCTTGCACGCGAAGGGTTGCAAAGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt > 6:104851/1‑122 (MQ=39) tGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa < 1:127446/149‑1 (MQ=255) aGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAgtgt > 7:165564/1‑149 (MQ=255) cccGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCg < 3:93705/149‑1 (MQ=255) cccGCCAAGGGTTCCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCg < 5:283882/149‑1 (MQ=255) cacgcgAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCg < 6:120314/147‑1 (MQ=255) cgcgAAGGGTTGCAACGCAACCCCATTATACTCTGTGCATTTTTACTATTTTCTGATCGGTCGCCCGCCAGATCTAGCGGCTGGTGTCATACCCATGCTGCCGCGCCCTTGTCATCAGGTTCTGACGCTCACAGGCCTGCAGTGTCGgt < 5:125138/149‑1 (MQ=255) gggTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCGGTGTgcgc < 7:11144/149‑1 (MQ=255) gTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCGGTGTGCGCGa < 1:276589/149‑1 (MQ=255) ttGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGATAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCGGTGTGCGCGa > 6:301125/1‑148 (MQ=255) | ATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGC‑GTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTCGGTGTGCGCGA > NC_002947/5740337‑5740631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |