Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,143,635 | G→A | 100% | P72P (CCG→CCA) | cusF → | copper efflux protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,143,635 | 0 | G | A | 98.0% | 156.1 / ‑4.8 | 49 | P72P (CCG→CCA) | cusF | copper efflux protein |
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (19/29); total (20/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.08e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TGGCCGGGATGAGCATGGATGGAATGGATATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCGGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATATTCGCAAACAGTAATTCGCCTAATTATCCT > NC_002947/6143490‑6143777 | tGGCCGGGATGAGCATGGATGGAATGGATATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATggccagcc < 2:170669/149‑1 (MQ=255) gggATGAGCATGGATGGAATGGATATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGAc < 4:180321/149‑1 (MQ=255) gATGAGCATGGATGGAATGGATATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCa > 6:48968/1‑149 (MQ=255) gCATGGATGGAATGGATATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGTTAAATGCAATTGACGACCAAGGCGGCACAGTGACCCTGATGCATGGACAGGTTGCTGCGTTGAAATGGCCAGCCATGACCATggac > 5:234173/1‑147 (MQ=255) tggatggaATGGATATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGGTCATGGctggc < 8:20931/149‑5 (MQ=255) tggatggaATGGATATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTc < 7:270032/149‑1 (MQ=255) gaatggaTATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGACAGCCATGACCATGGCCTTCAAAGc < 6:238758/148‑1 (MQ=255) tatGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTgcgc < 2:319888/149‑1 (MQ=255) atGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATggccagc < 6:255846/119‑1 (MQ=255) atGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATggccagc > 5:255846/1‑119 (MQ=255) gAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCTGCAGAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGGCAGCCAGGACCagg > 8:285756/1‑125 (MQ=255) gAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCAGAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATg < 7:285756/127‑1 (MQ=255) gAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCaa > 3:70151/1‑148 (MQ=255) aaGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAAc < 7:14086/148‑1 (MQ=255) aaGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACa < 1:109607/149‑1 (MQ=255) ggAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGc < 8:28297/149‑1 (MQ=255) ggAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCAGCGTTGAAATGGCCAGCCATGACCATGGACGTCAAAGCCTCTGCGCAACAGc > 4:4435/1‑149 (MQ=255) gAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCt < 4:70151/149‑1 (MQ=255) gAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCt > 5:331496/1‑149 (MQ=255) cccAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGAt < 2:169178/149‑1 (MQ=255) cccAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGAt < 2:174485/149‑1 (MQ=255) ccAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATg > 2:100371/1‑149 (MQ=255) aGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTg < 5:48968/148‑1 (MQ=255) aTGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAAc < 1:100371/149‑1 (MQ=255) gCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACg > 4:108350/1‑148 (MQ=255) gAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTaga < 7:81524/149‑1 (MQ=255) gggACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTc < 1:36591/96‑1 (MQ=255) gggACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTc > 2:36591/1‑96 (MQ=255) ggACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGATCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGttt < 4:144775/149‑1 (MQ=255) ggACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGttt < 8:209199/149‑1 (MQ=255) ggACGGTAAAGGCAATTGACCCCCAAGGCGGCCAAGTGACCCTCATGCATGGACCGTTTGCTGCGTTTAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGAAACAGCTCGATGGATTTAAGGTGGTAGACAACGTATAGttg < 6:234173/149‑2 (MQ=255) gTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCAt < 8:143585/77‑1 (MQ=255) gTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCAt > 7:143585/1‑77 (MQ=255) aGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCAAGGCCATCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTcgg > 7:210113/1‑146 (MQ=255) aaTTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCGGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCggatg > 1:263292/1‑148 (MQ=255) aTTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCggatgga > 6:269331/1‑149 (MQ=255) cGCCGATGGCGGCACAGTGATCCTGATGCATGGACCGGTTGCGGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACTTAGAGTTTGATTTCCGGATGGATGgc < 8:210113/148‑1 (MQ=255) gCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCAAGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGgcag > 5:139810/1‑149 (MQ=255) cccAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGgcagc < 2:263292/149‑1 (MQ=255) gcACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGAt > 6:17366/1‑93 (MQ=255) gcACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGAt < 5:17366/93‑1 (MQ=255) acaGTGACCCTGATGCATGGACCGGTTGCTTCGTTGAAATGGCCATCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGAt < 4:26296/149‑1 (MQ=255) caGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGAtt < 3:77536/149‑1 (MQ=255) ccTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGata > 7:114671/1‑149 (MQ=255) ccTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGata > 5:320455/1‑149 (MQ=255) gATGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATATTc > 3:150057/1‑149 (MQ=255) aTGCATGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATAtt < 6:331496/147‑1 (MQ=255) aTGGACCGGTTGCTGCGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATATTCGCaaa > 8:188429/1‑149 (MQ=255) tgcGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATATTCGCAAACAGTAATTCGcc > 6:188635/1‑148 (MQ=255) cGTTGAAATGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATATTCGCAAACAGTAATTCGCCTaa < 4:37378/149‑1 (MQ=255) aaaTGGCCAGCCATGACCAAGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATATTCGCAAACAGTAATTTGCCTAATTATc < 6:139810/149‑1 (MQ=255) aTGGCCAGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATATTCGCAAACAGTAATTCGCCTAATTATCCt < 6:320455/149‑1 (MQ=255) | TGGCCGGGATGAGCATGGATGGAATGGATATGAAGGAAACCCAATCAGCACCTTCCGCTCATGCAGAAGGGACGGTAAAGGCAATTGACGCCCAAGGCGGCACAGTGACCCTGATGCATGGACCGGTTGCTGCGTTGAAATGGCCGGCCATGACCATGGCCTTCAAAGCCTCTGCGCAACAGCTCGATGGATTGAAGGTGGGAGACAACGTAGAGTTTGATTTCCGGATGGATGGCAGCACGGCAACGATTGTTGATATTCGCAAACAGTAATTCGCCTAATTATCCT > NC_002947/6143490‑6143777 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |