Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 790,154 | A→T | 11.8% | intergenic (+42/+18) | gdhA → / ← PP_0676 | NADP‑dependent glutamate dehydrogenase/transcription elongation factor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 790,154 | 0 | A | T | 11.8% | 107.0 / 5.1 | 42 | intergenic (+42/+18) | gdhA/PP_0676 | NADP‑dependent glutamate dehydrogenase/transcription elongation factor |
Reads supporting (aligned to +/- strand): ref base A (17/20); new base T (2/3); total (19/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 |
ACTACGGTGAAGAGGCTGATGGCCGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGCCCAGCCCCGAGCAAAGCCCGCCCCAATGGCGAACCCCAGTTGATCAACCC > NC_002947/790009‑790300 | aCTACGGTGAAGAGGCTGATGGCCGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAag < 1:306260/149‑1 (MQ=255) cGGTGAAGAGGCTGATGGCCGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAagcagc > 5:182325/1‑149 (MQ=255) gAAGAGGCTGATGGCCGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGccc > 4:136672/1‑147 (MQ=255) agagGCTGATGGCCGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCTTTGCAGcccatc < 3:237100/148‑4 (MQ=255) ggCTGATGGCCGGATCAAGTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGcc < 6:182325/149‑1 (MQ=255) ggCTGATGGCCGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGcc < 3:136672/149‑1 (MQ=255) cGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCTTTGCAGcccatc > 7:172347/1‑132 (MQ=255) cGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCTTTGCAGcccatc < 8:172347/135‑4 (MQ=255) ggATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCg < 2:117709/149‑1 (MQ=255) aaCTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAggg > 8:262905/1‑131 (MQ=255) aaCTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAggg < 7:262905/131‑1 (MQ=255) aCTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCTTTGCAGcccat < 1:144529/127‑3 (MQ=255) aCTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCTTTGCAGcccat > 2:144529/1‑125 (MQ=255) cGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAAtct > 7:210108/1‑149 (MQ=255) cGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAAtc < 7:208370/148‑1 (MQ=255) cAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGCATCTCaa > 3:13334/1‑149 (MQ=255) aGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGGTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAacc < 8:210108/149‑1 (MQ=255) gCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACct > 2:283655/1‑148 (MQ=255) ggCTTCGTGAAAGTGGCCGATGCTATGCTTGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCGCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTc < 1:57432/149‑1 (MQ=255) gCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTcc > 5:220542/1‑149 (MQ=255) aaaGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACctct < 4:216252/129‑1 (MQ=255) aaaGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACctct > 3:216252/1‑129 (MQ=255) aaaGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCgg > 1:72359/1‑149 (MQ=255) aaaGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCgg < 1:283655/149‑1 (MQ=255) gTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAggg < 5:220929/92‑1 (MQ=255) gTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAggg > 6:220929/1‑92 (MQ=255) tgcTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGCGGGCCGCTTTGCGTCGCGATGGGCAGCAAAGCACCCCCAGGGCCAACAACCCTCGCCCAGAATCTCAACCACCTATAAAGCCAGTTCACCCACCCGCCGCCGCAAGaccac > 4:30336/1‑148 (MQ=255) aGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAg > 2:257116/1‑88 (MQ=255) aGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAg < 1:257116/88‑1 (MQ=255) gCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGc < 2:72359/149‑1 (MQ=255) tgatctgaGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGaccac > 7:3971/1‑128 (MQ=255) tgatctgaGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGaccac < 8:3971/128‑1 (MQ=255) tgatctgaGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGCCCAGcccc > 4:114728/1‑149 (MQ=255) tgaGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCCGCCCCCGCCAGACCACCACCTCCCCCCGCCCAGcccccacc > 6:142470/1‑144 (MQ=255) cGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCACAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGcc > 4:104493/1‑131 (MQ=255) cGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCACAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGcc < 3:104493/131‑1 (MQ=255) tAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGCCCAGCCCCGAGCAAAgcccgc < 6:220542/149‑1 (MQ=255) cGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGCCCAGCCCCGAGCAAAGCCCGCCCCAATGGCGAAccc < 1:143975/149‑1 (MQ=255) gTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCCCCGGCCGCCGCCAGACCCCCTCATCCCCCGGCCCACCCCCGAGCAAACCCCGCCCCAATGGCGCAcccc > 1:287169/1‑149 (MQ=255) cTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGCCCAGCCCCGAGCAAAGCCCGCCCCAATGGCGAACCCCAGTTGATCAAc < 4:13334/149‑1 (MQ=255) cAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGCCCAGCCCCGAGCAAAGCCCGCCCCAATGGCGAACCCCAGTTGATCAAccc < 3:30336/148‑1 (MQ=255) cAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGCCCAGCCCCGAGCAAAGCCCGCCCCAATGGCGAACCCCAGTTGATCAAcc < 6:62294/147‑1 (MQ=255) | ACTACGGTGAAGAGGCTGATGGCCGGATCAACTACGTCAAGGGGGCGAACATCGCGGGCTTCGTGAAAGTGGCCGATGCGATGCTGGCTCAGGGCGTGGTCTGATCTGAGACCGTAGGGGGCCGCTTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGGGCCCTCAACCCTCGCCCAGAATCTCAACCACCTCTATCACCTGTTCCCCCACCGGCCGCCGCCAGACCACCTCATCCCCCGGCCCAGCCCCGAGCAAAGCCCGCCCCAATGGCGAACCCCAGTTGATCAACCC > NC_002947/790009‑790300 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |