Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 802,771 | C→A | 9.5% | intergenic (+29/‑57) | obg → / → proB | GTPase Obg/glutamate 5‑kinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 802,771 | 0 | C | A | 9.5% | 153.1 / 6.9 | 53 | intergenic (+29/‑57) | obg/proB | GTPase Obg/glutamate 5‑kinase |
Reads supporting (aligned to +/- strand): ref base C (24/24); new base A (2/3); total (26/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.27e-01 |
GTACCCTGCGTCGTACCGGCGTCAAGAGCGTGCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGACCGCCGATGGCAAGGGCCTC > NC_002947/802627‑802908 | gTACCCTGCGTCGTACCGGCGTCAAGAGCGCGCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGa < 8:68887/149‑1 (MQ=255) cTGCGTCGTACCGGCGGCAAGAGCGTGCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAgcggc < 3:216228/149‑1 (MQ=255) gcgtACCGGCGTCACCAGCGTGCATGACATCGGCGCCTACGATGGTTGGGACGATGATTTCGAGCACGACCAACCCGGCCCGTAAATAATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCCCGCGCGCGGCGttta < 4:108808/148‑2 (MQ=255) gtACCGGCTTCAAGAGCGTGCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCCAGAGAGCGGCGtttagt < 8:253076/149‑4 (MQ=255) cGGCGTCAAGAGCGTGCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCTGCGTTTTTGTATc > 3:119825/1‑149 (MQ=255) agagCGTGCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTa > 1:257655/1‑148 (MQ=255) gagCGTGCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATc < 2:73920/149‑1 (MQ=255) gCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCGATCTCGAGCGGCGTTTTTGTATCCACCGTATCTa > 8:292252/1‑145 (MQ=255) aTGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCTGCGTTTTTGTATCCACGGTATCTACAGAtt < 4:119825/149‑1 (MQ=255) aCATCGGGGACGACGATGGTTGGGACTATGATTTCGAGGACGACGTAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCCAGAGAGCGGCGttt < 4:191485/122‑1 (MQ=255) aCATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCCAGAGAGCGGCGttt > 3:191485/1‑122 (MQ=255) tGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGgaagaa > 8:283797/1‑148 (MQ=255) ggTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGtt > 8:186175/1‑140 (MQ=255) ggTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGtt < 7:186175/140‑1 (MQ=255) tgACGATGATTTAGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGa < 7:292252/148‑1 (MQ=255) gACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGaa < 7:11952/149‑1 (MQ=255) gatgatTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGgaagaa > 4:87143/1‑138 (MQ=255) gatgatTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGgaagaa < 3:87143/138‑1 (MQ=255) tttCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACa > 5:20614/1‑120 (MQ=255) tttCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACa < 6:20614/120‑1 (MQ=255) gacgaAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTgg > 1:138387/1‑118 (MQ=255) gacgaAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTgg < 2:138387/118‑1 (MQ=255) cgaAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAg > 1:25221/1‑149 (MQ=255) cgaAGACGGGCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAg < 8:193760/149‑1 (MQ=255) aaGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAgcg > 3:185530/1‑149 (MQ=255) gACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCt > 7:152209/1‑149 (MQ=255) ggTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTggg > 2:177616/1‑149 (MQ=255) gTCCGGAAACCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGt > 2:270941/1‑149 (MQ=255) ggAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGt > 7:99332/1‑148 (MQ=255) aTTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGAtt < 2:25221/148‑1 (MQ=255) tACGTGCGCGACTGATAGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGc < 8:76042/148‑1 (MQ=255) gcgACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGTGATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCTCCAACCGGGGGGTCGTTAAGCTTGGCAGTGctct > 8:233225/1‑149 (MQ=255) cgACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTctg < 4:185530/149‑1 (MQ=255) gACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAg < 2:175449/118‑1 (MQ=255) tGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTctgct < 2:186446/147‑1 (MQ=255) tGATCGGTTGCAGTACACTAAACGCCGCACTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTctgct > 1:186446/1‑147 (MQ=255) aTCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTAGCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGAc < 7:283797/148‑1 (MQ=255) tCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATACACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGAccg > 8:257462/1‑149 (MQ=255) gTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCAAGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGAAGTGCTCTGCTGAcagcc > 2:128703/1‑148 (MQ=255) ttGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGACCGCCGa < 2:257655/149‑1 (MQ=255) gCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGt < 2:184067/130‑1 (MQ=255) gCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGt > 1:184067/1‑130 (MQ=255) gCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGACCGCCGAt < 1:191693/148‑1 (MQ=255) cacTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGACCGCCGATGGCAAgg < 8:99332/149‑1 (MQ=255) cacTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGACCGCCGATGGCAAgg > 5:152570/1‑149 (MQ=255) aaaaaCGCCGCTCCAGAGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTggg < 7:39638/103‑1 (MQ=39) aaaaaCGCCGCTCCAGAGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTggg > 8:39638/3‑105 (MQ=39) tAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGACCGCCGATGGCAAGGGcc > 6:76711/1‑149 (MQ=255) tAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGATCTGCTGACCGCCGATGGCAAGGGc > 8:157414/1‑148 (MQ=255) aaCGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGACCGCCGATGGCAAGGGcc < 1:177616/147‑1 (MQ=255) aaCGCCGCTCTCTGGAGCGGCGGTTTTGTATCCCCGGTATCGACAGAGTCGACATAGGGTGGAATAAGATGCGAAGAAAGGTGCCGGGCGCCCCGCGCTGTGGCGTTAAGATTGGCAGTGGTATGCTGACCGCCCATGCGAAGGGCCTc > 6:222806/1‑149 (MQ=255) aCGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACAt < 7:90247/54‑1 (MQ=255) aCGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACAt > 8:90247/1‑54 (MQ=255) | GTACCCTGCGTCGTACCGGCGTCAAGAGCGTGCATGACATCGGCGACGACGATGGTTGGGACGATGATTTCGAGGACGACGAAGACGGTCCGGAAATCATTTACGTGCGCGACTGATCGGTTGCAGTACACTAAACGCCGCTCTCTGGAGCGGCGTTTTTGTATCCACGGTATCTACAGATTCGACATAGGTTGGAAGAAGATGCGAAGCAAGGTGACGGGCGCCAAGCGCTGGGTCGTTAAGATTGGCAGTGCTCTGCTGACCGCCGATGGCAAGGGCCTC > NC_002947/802627‑802908 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |