Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 902,619 | A→C | 7.0% | intergenic (+45/+31) | trxB → / ← nadC | thioredoxin reductase/quinolinate phosphoribosyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 902,619 | 0 | A | C | 7.0% | 166.6 / 2.3 | 55 | intergenic (+45/+31) | trxB/nadC | thioredoxin reductase/quinolinate phosphoribosyltransferase |
Reads supporting (aligned to +/- strand): ref base A (28/23); new base C (2/2); total (30/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTTACCGCCAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAGGGTCGTTTCGTTGAC > NC_002947/902479‑902763 | gTTTACCGCCAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCgg < 3:291321/149‑1 (MQ=255) ccGCCAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGttttt > 7:15557/1‑149 (MQ=255) gCCAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTa < 1:11085/149‑1 (MQ=255) ccAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTAt > 6:189242/1‑149 (MQ=255) ccAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTAt > 8:40151/1‑149 (MQ=255) ccAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTAt > 2:313029/1‑149 (MQ=255) cAGGCCATCCCTTCGGCCTGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTGTGGCCAACGCCTCGTTCTGCGCTGAGCAACAGGGGTGCAACGCGCCCCCAATCAAACACCGGCGCTGGGCCGGTTTTTTAtt < 1:91932/149‑1 (MQ=255) cAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGACAAAGGGGTGCAAAGCGCCCCCAATAAAAACCCGGCGCTTGGCCGGTTTTTTAtt < 1:87802/149‑1 (MQ=255) aTCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGttt > 4:319405/1‑137 (MQ=255) aTCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGttt < 3:319405/137‑1 (MQ=255) tCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGt < 4:250492/134‑1 (MQ=255) tCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGt > 3:250492/1‑134 (MQ=255) aCTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAAt < 5:36728/149‑1 (MQ=255) cGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCa < 1:313029/147‑1 (MQ=255) gTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAg < 8:15557/149‑1 (MQ=255) gTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAg < 1:322598/149‑1 (MQ=255) cGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCt < 5:189242/149‑1 (MQ=255) gggCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCt > 7:9597/1‑148 (MQ=255) cATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTc < 5:332424/147‑1 (MQ=255) cATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGc < 8:9597/149‑1 (MQ=255) cTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGt < 5:72371/149‑1 (MQ=255) aGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCtt > 1:203249/1‑148 (MQ=255) aCCTGGACGGTTTGGCCAACGCCTCGTTGTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATc > 1:186073/1‑149 (MQ=255) ccTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGCCGCATCGACAGGTCCACCGCTTTCACATcc > 8:255945/1‑149 (MQ=255) cTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAg > 5:184410/1‑111 (MQ=255) cTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAg < 6:184410/111‑1 (MQ=255) tGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCtt > 3:276222/1‑149 (MQ=255) cAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGt > 8:289780/1‑104 (MQ=255) cAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGt < 7:289780/104‑1 (MQ=255) cAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCAcc > 2:152822/1‑148 (MQ=255) gCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCg < 2:203249/149‑1 (MQ=255) cTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATc > 4:166721/1‑146 (MQ=255) atctgaGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGt < 4:276222/147‑1 (MQ=255) tctgaGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCa > 7:89417/1‑149 (MQ=255) tctgaGAAAAAGGGGTGCAAAGCCCCCCCAATAAAAAACCGGCAAAGCGCCCGTATTTTATTGCCTGGAATCAGCTCACAGGCTCAGTCGCATCGACACGTACACAGCTTTAAACTCCATCCTCAACGCACCAAACGAGATGTAGTcc > 8:253819/1‑148 (MQ=255) gagaAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGt > 5:241766/1‑120 (MQ=255) gagaAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGt < 6:241766/120‑1 (MQ=255) gagaAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCAccc > 8:292200/1‑149 (MQ=255) aaaaaGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGCGATGTAGTCCACCCCCg > 4:271372/1‑149 (MQ=255) aaaGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGtc > 4:175486/1‑149 (MQ=255) gggTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCgg < 7:292200/149‑1 (MQ=255) ggTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTa > 3:210142/1‑131 (MQ=255) ggTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTa < 4:210142/131‑1 (MQ=255) aGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGGTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGCCAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCCCCCCCGTCTCGGCAATcccc > 7:36988/1‑149 (MQ=255) gcAATAAAAAACCGGCGCTTGGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAggg > 6:244010/2‑149 (MQ=39) aaTAAAAAACCGTCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGAt < 5:1110/112‑1 (MQ=255) aaTAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGAt > 6:1110/1‑112 (MQ=255) tAAAAAACCGGCGCTTGGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAGGGtcgt > 4:24550/1‑149 (MQ=255) aaaaaaCCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATc < 4:106626/104‑1 (MQ=255) aaaaaaCCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATc > 3:106626/1‑104 (MQ=255) aaaaaCCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAGGGtcgttt > 7:151646/1‑149 (MQ=255) aaaaaCCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAGGGtcgttt > 4:97679/1‑149 (MQ=255) aaaCCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAGGGtcgtttcg < 3:166721/149‑1 (MQ=255) aaCCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAGGGtcgtttcgt < 8:89417/149‑1 (MQ=255) ggCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAGGGTCGTTTCGTTGAc > 6:247427/1‑149 (MQ=255) | GTTTACCGCCAGGCCATCACTTCGGCCGGTGCGGGCTGCATGGCGGCGCTGGATGTCGAGCGCTACCTGGACGGTTTGGCCAACGCCTCGTTCTGATCTGAGAAAAAGGGGTGCAAAGCGCCCCCAATAAAAAACCGGCCAAGCGCCGGTTTTTTATTGCCTGCAATCAGCTCACAGGCTCAGTCGCATCGACAGGTCCACCGCTTTCACATCCTTGGTCATGGCACCAATCGAGATGTAGTCCACCCCCGTCTCGGCAATCACCCGCAGGGTCGTTTCGTTGAC > NC_002947/902479‑902763 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |