Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 977,870 | G→A | 9.3% | intergenic (+36/‑144) | cysE → / → iscR | serine acetyltransferase/DNA‑binding transcriptional regulator IscR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 977,870 | 0 | G | A | 9.3% | 114.8 / 3.0 | 43 | intergenic (+36/‑144) | cysE/iscR | serine acetyltransferase/DNA‑binding transcriptional regulator IscR |
Reads supporting (aligned to +/- strand): ref base G (20/19); new base A (2/2); total (22/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.42e-01 |
ACCAAGATGGGCAGTGACTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTCCCGTGGTACCCAATAGCCA > NC_002947/977730‑978014 | aCCAAGATGGGCAGTGACTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTc < 4:71925/148‑1 (MQ=255) ccAAGATGGGCAGTGACTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCgt > 6:42259/1‑141 (MQ=255) ccAAGATGGGCAGTGACTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCgt < 5:42259/141‑1 (MQ=255) cAAGATGGGCAGTGTCTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACg > 7:13906/1‑149 (MQ=255) aGTGACTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCt > 1:46923/1‑149 (MQ=255) gTGACTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTg < 3:85029/149‑1 (MQ=255) gTGACTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTg < 4:119816/149‑1 (MQ=255) tgCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCAATGATCGCGCCTCACTCAAGACATGGAGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATcgc > 1:61488/1‑149 (MQ=255) ccAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCt < 8:185375/122‑1 (MQ=255) ccAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCt > 7:185375/1‑122 (MQ=255) ccAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCgcgc > 8:105506/1‑149 (MQ=255) tGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTccc > 2:86544/1‑149 (MQ=255) ccGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTccc < 2:46923/147‑1 (MQ=255) ccGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCt < 2:151072/148‑1 (MQ=255) cGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGa < 7:113217/149‑1 (MQ=255) gCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATg > 5:71766/1‑149 (MQ=255) acTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCTGCCTCCCTGATGCAATCCCGACTAAAGc < 8:13906/149‑1 (MQ=255) aaGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGa > 5:56776/1‑149 (MQ=255) tGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGAt < 3:208416/111‑1 (MQ=255) tGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGAt > 4:208416/1‑111 (MQ=255) ccAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAAt > 3:318402/1‑149 (MQ=255) ccAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGCGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAAt > 5:277676/1‑149 (MQ=255) gcgACACTCAGCCGGATTGCTCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCg < 7:92212/149‑1 (MQ=255) gACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCATGTGCTCTCGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTGTAATAGTTGTCGTAAAAGCTCggg > 8:206524/1‑149 (MQ=255) gACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCATGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCgg > 8:206526/1‑148 (MQ=255) cTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATc < 4:163746/149‑1 (MQ=255) tCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCCCGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCg > 6:151369/1‑149 (MQ=255) tCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGt < 8:242330/127‑1 (MQ=255) tCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGt > 7:242330/1‑127 (MQ=255) ccGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATa > 4:259768/1‑149 (MQ=255) ccGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATa > 5:100281/1‑149 (MQ=255) aTTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGAGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCg < 3:220225/149‑1 (MQ=255) cgccgcACTGAAGTCATGGTGGCATGCGGGGCATGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATc < 7:206526/149‑1 (MQ=255) cgccgcACTGAAGTCATGGTGGCATGCCGGGCATGTGCTCACGCCCCTCGTCTGCTACAATCCCGCCCCCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGcacacacc < 7:206524/149‑3 (MQ=255) gAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTc > 7:99952/1‑149 (MQ=255) aaGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGca < 7:73238/133‑1 (MQ=255) aaGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTcc > 8:87372/1‑149 (MQ=255) aaGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTcc > 3:254854/1‑149 (MQ=255) aaGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGAATTAAATGCTCGGGATTCGCATACTCgaa > 8:73238/1‑131 (MQ=255) tCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTCCCGt < 7:87372/149‑1 (MQ=255) aTGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGa < 3:99760/138‑1 (MQ=255) aTGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGa > 4:99760/1‑138 (MQ=255) gtggCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTCCCGTGGTa < 7:105506/148‑1 (MQ=255) cATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCTGTAGGTCTAATAGTTGACTCAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTCCCGTGGTACCCaa < 1:86544/149‑1 (MQ=255) gggCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTCCCGTGGTACCCAATAGCCa < 6:277676/149‑1 (MQ=255) | ACCAAGATGGGCAGTGACTATTGTGCCAAGGAACTGCCGGCCTTGCCGGAGGACGACTTCAGCGAGGCTGCCCAAGTGGCCCAGCGCGACACTCAGCCGCATTGATCGCGCCGCACTGAAGTCATGGTGGCATGCGGGGCGTGTGCTCACGCCCCTCGTCTGCTACAATCGCGCCCGCCTCCCTGATGCAATCCCGACTAAAGCAGTAGGTCTAATAGTTGACTTAAATGCTCGGGAATCGCATACTCGCACACATCCTGAAACTCCCGTGGTACCCAATAGCCA > NC_002947/977730‑978014 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |