Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,236,978 | A→G | 9.6% | intergenic (+17/+21) | ybaK → / ← PP_1078 | Cys‑tRNAPro deacylase/ABC transporter ATP‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,236,978 | 0 | A | G | 9.6% | 136.7 / 5.7 | 52 | intergenic (+17/+21) | ybaK/PP_1078 | Cys‑tRNAPro deacylase/ABC transporter ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base A (24/23); new base G (2/3); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.70e-01 |
TGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAGGTGATCGGCCTTCACTGCAATCTCCACATTC > NC_002947/1236835‑1237116 | tgaCTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCAGAGTACACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCgg < 1:99531/148‑1 (MQ=255) ggCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTg < 5:316826/149‑1 (MQ=255) ggCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGAGGGCCGCTTGGCGGCCccct < 6:113534/148‑1 (MQ=255) cAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTc > 7:120011/1‑149 (MQ=255) cAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGAGGGCCGCTTGGCGGCCCCCTgttct < 5:159598/149‑5 (MQ=255) aGAATTTTGCAAATATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGGTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCt < 1:36234/149‑1 (MQ=255) aTTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGaa < 5:80559/149‑1 (MQ=255) aTTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGaa < 5:85316/149‑1 (MQ=255) cAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGaagtcaa < 7:15638/148‑1 (MQ=255) aaCTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGaagtcaag > 4:167435/1‑148 (MQ=255) aaCTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGAGGGCCGCTTGGCGGCCCCCTgttc < 5:264056/137‑4 (MQ=255) aaCTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGAGGGCCGCTTGGCGGCCCCCTgttc > 6:264056/1‑134 (MQ=255) cgcCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGc < 6:37108/110‑1 (MQ=255) cgcCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGc > 5:37108/1‑110 (MQ=255) tGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCAtt > 4:27204/1‑149 (MQ=255) gCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATtct > 3:63320/1‑149 (MQ=255) cTGGAACTGGAGTTGGCCGCAGCGGTGCTGGAGGAGTATACGCACGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAAGGAGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTcc > 7:206505/1‑149 (MQ=255) gAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTg < 8:120011/148‑1 (MQ=255) ggCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACtg > 1:322869/1‑149 (MQ=255) ggCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACtg > 3:150378/1‑149 (MQ=255) gTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACg > 4:249662/1‑149 (MQ=255) tGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTAc > 4:132894/1‑149 (MQ=255) ggCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTAcc < 8:130622/149‑1 (MQ=255) gCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTAccc > 3:61140/1‑149 (MQ=255) gCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTAccc > 3:31722/1‑149 (MQ=255) gCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTAcc < 3:167435/148‑1 (MQ=255) tataCGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTAcc > 1:299450/1‑149 (MQ=255) taCGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCgg < 2:299450/149‑1 (MQ=255) cAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGCACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGaa > 3:99889/1‑148 (MQ=255) gCACGTTTGCCGGGTTTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCa < 8:206505/149‑1 (MQ=255) gCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCa > 3:94800/1‑149 (MQ=255) gCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCAGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCa < 6:319582/149‑1 (MQ=255) aCGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCggg > 7:176189/1‑140 (MQ=255) aCGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCggg < 8:176189/140‑1 (MQ=255) cGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGa < 4:63320/149‑1 (MQ=255) gTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAg < 3:27204/149‑1 (MQ=255) tttGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAgg < 4:61140/149‑1 (MQ=255) gCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCgg < 2:232509/133‑1 (MQ=255) gCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCgg > 1:232509/1‑133 (MQ=255) cGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCAGGAATAGCAAGAGGTGATc > 8:248732/1‑149 (MQ=255) ggTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAGGTGATCGGCCtt < 4:150378/148‑1 (MQ=255) ggTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAGGTGATCGGCCtt < 2:322869/148‑1 (MQ=255) tCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCg < 4:79267/121‑1 (MQ=255) tCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCg > 3:79267/1‑121 (MQ=255) ggCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCaa > 4:118980/1‑102 (MQ=255) ggCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCaa < 3:118980/102‑1 (MQ=255) tGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTAccc < 4:64984/107‑1 (MQ=255) tGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTAccc > 3:64984/1‑107 (MQ=255) aaCAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAGGTGATCGGCCTTCACTGCAATCTCca > 1:243643/1‑149 (MQ=255) cAGAGGGCCGCTTGGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAGGTGATCGGCCTTCACTGCAATCTCcaca > 1:310955/1‑149 (MQ=255) aGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAAATGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAGGTGATCGGCCTTCACTGCAATCTCCACAt > 6:178573/1‑149 (MQ=255) ggggCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGACGCAACGCTACCCGGTACCGGGAATAGCACGAGGTGATCGGCCTTCACTGCAATCTCCACATtc > 8:291249/1‑149 (MQ=255) | TGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCGTGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAGTCAAGTCGCCGAACTGTATCGACGCACGCCATTCTCCTGGCGTGGCAACTGTGCCGCAACGCTACCCGGTACCGGGAATAGCACGAGGTGATCGGCCTTCACTGCAATCTCCACATTC > NC_002947/1236835‑1237116 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |