| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,634 | C→T | 41.3% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,634 | 0 | C | T | 41.3% | 68.0 / 98.8 | 92 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (24/30); new base T (19/19); total (43/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 101 total aligned reads displayed.
CCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG > NC_002947/195493‑195780 | ccAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGa > 2:316841/1‑149 (MQ=39) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGAc < 6:334571/149‑1 (MQ=39) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGAc < 1:216842/149‑1 (MQ=39) aCCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCt < 4:182678/149‑1 (MQ=39) aCCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCt > 3:322244/1‑149 (MQ=39) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGa > 5:305386/1‑149 (MQ=39) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGa > 2:18287/1‑149 (MQ=39) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACg < 1:316841/149‑1 (MQ=39) cAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGc > 2:181541/1‑147 (MQ=38) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCg > 2:52087/1‑149 (MQ=17) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCg < 5:125550/149‑1 (MQ=37) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 5:151616/1‑149 (MQ=37) acaacaACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTc > 6:252543/1‑149 (MQ=17) ccacaccGGTTCGACCGGCAGCGTCACCATCGAGACCGCCACCGGCGGTAATTGCGCCCAACTGACCCCGACTCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGt < 6:46246/145‑1 (MQ=11) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 2:205709/1‑149 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 5:196487/1‑149 (MQ=17) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCCCTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCAGACGGCGAGCCCGTCGGTCAc > 3:67585/1‑149 (MQ=11) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 1:25913/1‑149 (MQ=17) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACaccaccacc < 7:221869/118‑1 (MQ=39) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACaccaccacc > 8:221869/1‑118 (MQ=39) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 2:191228/1‑148 (MQ=17) ttCGACCGTCAGCGTCACCATCGAGAACGCAACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 6:76281/147‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:269452/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 6:9411/149‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 7:121863/1‑149 (MQ=17) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 8:121863/149‑1 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCCCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 7:229473/1‑149 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 7:15969/149‑1 (MQ=17) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCGGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc < 4:322244/149‑1 (MQ=255) gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 6:305386/149‑1 (MQ=39) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 1:740/1‑148 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 5:86165/148‑1 (MQ=39) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 3:151734/1‑149 (MQ=39) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGACCCCGTCGGTCACCGAAGGCGGCGTGAGCACATACAcc > 6:86165/1‑148 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCTACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCGTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg < 4:67585/149‑1 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGCCACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 1:66861/1‑149 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGTGGAAAAAGACTCGGTCGCCACCAATACCGCGCCCCTGACGCCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 1:103137/1‑149 (MQ=11) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:283112/1‑148 (MQ=39) gagaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 5:161614/148‑1 (MQ=39) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 6:252705/149‑1 (MQ=17) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt > 3:51218/1‑149 (MQ=17) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 2:740/149‑1 (MQ=17) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt > 7:87506/1‑149 (MQ=17) cGCCCCAGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGACCAC‑‑TATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGTCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 2:66861/149‑1 (MQ=11) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 4:151734/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:205709/149‑1 (MQ=39) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 6:196487/149‑1 (MQ=17) acaggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCaa < 5:252543/146‑1 (MQ=17) caggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc < 2:25913/147‑1 (MQ=17) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc < 1:18287/149‑1 (MQ=39) gTAATTTCGCGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCACCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCTAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc < 8:137406/149‑1 (MQ=11) tAATTTCGAGCAACTGACCCCGAATCCGACACCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc > 5:269040/1‑148 (MQ=37) aaTTTCGAGCAACTGACACCGAATCCGACCCCGGCTCAGCCCAC‑‑GATCAACGACTCGGTCGACACAACCACCGCGACCCTGACGGCGAGCCCGTCGGTCCGCGAAGGCGGCGTGATCACTTACACCGTGACCATGAGCAACCCTGcc > 6:105514/1‑147 (MQ=14) cGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 4:100537/132‑1 (MQ=17) cGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 3:100537/1‑132 (MQ=17) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 5:161564/128‑1 (MQ=38) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt > 6:161564/1‑128 (MQ=38) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 1:191228/149‑1 (MQ=21) gCAACTGACCCCGAATCCGACCCCGGCTCAGACAAC‑‑GATCAACGACTCGGTCGACAACACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACATACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg > 5:81639/1‑149 (MQ=255) aCTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa > 7:46895/1‑125 (MQ=17) aCTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:46895/125‑1 (MQ=17) gACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCg > 7:39604/1‑149 (MQ=40) aCCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt < 7:232420/149‑1 (MQ=12) aCCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCCCCGCGCCCCTGCCGGCGAGCCCGTCGGTCACCGACGGCGGCGTGATCACTTACACCGTGACCCTGa > 1:327353/1‑121 (MQ=255) cccGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTAAACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAACGTGa > 8:239149/1‑149 (MQ=255) cccGAATCCGACCCCGGCTCAGACCAC‑‑GATAAACCACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAACCCGTCCGTCACCGAAGGCGGCGTGATCCCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa > 1:109961/1‑149 (MQ=11) ccGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 7:46212/1‑149 (MQ=255) ccGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 6:151616/149‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 1:154739/1‑149 (MQ=255) cGATTCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc < 5:275865/143‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 5:72452/1‑94 (MQ=18) cGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 6:72452/94‑1 (MQ=18) cGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAACGCGGCGAGATCACTTACACAGTGACCCAGAGCAACCCTGCCCAGACGCCGGTAACCgagagc > 6:275865/1‑147 (MQ=14) aaTCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCt < 8:46212/149‑1 (MQ=255) tCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 1:23637/90‑1 (MQ=35) tCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 2:23637/1‑90 (MQ=35) tCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 2:283112/149‑1 (MQ=255) cccGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 4:51218/149‑1 (MQ=38) ggCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGcc < 8:39604/149‑1 (MQ=39) ggCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc > 6:188048/1‑148 (MQ=39) aGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCACGTCGGTCACCGAAGGCGGCGTGATCACTAACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa < 5:105514/147‑1 (MQ=255) aCCAC‑‑GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 1:52087/149‑1 (MQ=255) aC‑‑GATCAACGAGTCGTTCGATGACACCTACGCGAACCTGACGGCGAGCCCGTGGGTCATCGAAGGCGGCGTGATCACTTACTCGGTGAACCTGATCTACCATGCGCTGTCGCGGGTGACCGTGACCCTTTCCATGGGGCAATCGATTAc < 4:104264/149‑1 (MQ=2) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACACCGGTAACCGTGAACCTGTCCAACGGCCaa < 8:277872/139‑1 (MQ=255) aCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTg > 3:63024/1‑147 (MQ=39) aCTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg < 5:188048/149‑1 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 2:103137/149‑1 (MQ=255) cTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 1:181541/149‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 1:156796/1‑148 (MQ=255) gTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa > 7:39473/1‑148 (MQ=39) gACAGCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGAGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAc < 8:229473/149‑1 (MQ=255) gACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 4:63024/148‑1 (MQ=39) gACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAc > 4:225341/1‑149 (MQ=39) accactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 6:284226/149‑1 (MQ=255) ccactaccGGGACACTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAGCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 6:81639/149‑1 (MQ=255) ccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg > 7:242035/1‑149 (MQ=39) cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 3:96602/1‑149 (MQ=255) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc > 8:108175/1‑88 (MQ=38) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 7:108175/88‑1 (MQ=38) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg > 7:34343/1‑149 (MQ=39) | CCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAC‑‑GATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG > NC_002947/195493‑195780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |