| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,306 | T→C | 24.2% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,306 | 0 | T | C | 24.2% | 158.5 / 53.3 | 91 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (32/37); new base C (9/13); total (41/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.96e-01 | |||||||||||
GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAC > NC_002947/196163‑196453 | ggTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGCTCACTTACACCGTGACCCTGAGCAATCCTGc > 5:77139/1‑149 (MQ=255)ggTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGc > 4:311751/1‑149 (MQ=39)ggTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGc < 5:32966/149‑1 (MQ=39)ggTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGc > 7:42299/1‑149 (MQ=39) gTAATTTCTAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCTACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCTAAGGGGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGcc < 5:257881/149‑1 (MQ=255) gTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGcc < 5:325664/149‑1 (MQ=39) gTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGcc > 3:103944/1‑149 (MQ=39) aGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTATACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCg < 3:75753/149‑1 (MQ=38) cAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGt < 5:287357/149‑1 (MQ=37) cAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGt < 6:18766/149‑1 (MQ=37) cAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATAAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGt > 2:86736/1‑149 (MQ=37) aaCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCACTCCTGCCC‑‑AGACGCCGGt > 5:67064/1‑148 (MQ=25) tGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGa > 6:11023/1‑147 (MQ=35) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTCCCGCGACCCTGACGGAGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACTCGGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGt < 6:274217/149‑1 (MQ=255) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGt > 8:38276/1‑149 (MQ=39) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGt < 3:311751/149‑1 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGa > 5:211976/1‑149 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGa > 3:135387/1‑149 (MQ=39) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGAcc > 6:220762/1‑149 (MQ=39) aaCCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCt < 1:97084/149‑1 (MQ=39) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTc < 7:20097/149‑1 (MQ=39) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTc < 4:135387/149‑1 (MQ=39) cGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTc > 8:74391/1‑148 (MQ=39) aCGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCaa < 4:81678/149‑1 (MQ=39) cGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAAc < 5:220762/149‑1 (MQ=39) cGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAAc < 7:38276/149‑1 (MQ=39) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACg < 6:211976/149‑1 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc > 6:121734/1‑148 (MQ=39) gACCACGATCAACGACTCGGGCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGGGACAGTGACCCTGTCCAACGGCCAAACCa < 3:219802/149‑1 (MQ=255) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt < 5:11023/149‑1 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 7:177019/1‑149 (MQ=39) aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAACCCATTAc > 8:268376/1‑149 (MQ=255) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt < 6:308631/149‑1 (MQ=39) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 2:2704/1‑148 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 3:266767/1‑147 (MQ=39) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc < 7:74391/149‑1 (MQ=39) cTCGGTCGACACCTCTACGGCGACGCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTTAGCAATCCTGCCC‑‑AGTCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGGCg < 6:260636/149‑1 (MQ=11) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc > 2:258702/1‑148 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGACCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 2:163701/147‑1 (MQ=255) ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg < 3:159543/149‑1 (MQ=37) accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCATAGACGCAGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAg < 1:98825/146‑1 (MQ=1) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 7:297641/1‑149 (MQ=17) tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 6:33007/1‑147 (MQ=11) caCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCa < 4:72713/148‑1 (MQ=9) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCATGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCg > 5:276716/1‑149 (MQ=21) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 5:118836/149‑1 (MQ=12) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg < 6:74538/137‑1 (MQ=34) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg > 5:74538/1‑137 (MQ=34) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt < 1:86736/149‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 4:321586/149‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc < 2:282860/148‑1 (MQ=255) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa < 5:289354/149‑1 (MQ=34) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCATGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa < 6:276716/149‑1 (MQ=21) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa > 1:31844/1‑149 (MQ=255) gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg < 5:307103/149‑1 (MQ=255) cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg < 7:65567/149‑1 (MQ=255) cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc > 2:217845/1‑148 (MQ=34) tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGaa < 3:35028/149‑1 (MQ=255) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTCAAGCCGGAAACACCCAAGGCACCGGCGAATTCAAAACCCCCGCCAAt > 8:47663/1‑148 (MQ=11) cACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACg < 7:73016/149‑1 (MQ=255) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACg > 6:217410/1‑148 (MQ=34) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 1:206239/1‑149 (MQ=34) ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc < 2:31844/149‑1 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGCTTTCCAGACCCCGGCGAATGACGTc > 7:111970/1‑148 (MQ=21) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 3:6931/1‑148 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCAGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 2:6359/1‑148 (MQ=11) gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 1:258702/149‑1 (MQ=34) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 5:217410/149‑1 (MQ=34) gATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCATGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCACACCCCCGGGCAGCGTCGAGTTCCAGCCCCCGGCGAATGACGTCGACAACACCGGtg > 8:251981/1‑148 (MQ=11) tCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCTGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 8:177019/148‑1 (MQ=21) tCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGAACCTGTCCAACGGCCAAACCATTACCGTTGAAGCAGGCAAAACCCAGGGCAGCGACGATATCCAGACCCCGGCGAAAGACGGCTACAACAACGGATCg > 6:174293/1‑149 (MQ=11) aCTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 2:206239/148‑1 (MQ=34) aCTTACACCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 6:8005/148‑1 (MQ=255) atctcacCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 2:233384/145‑1 (MQ=11) ttACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCAACGGCAGCGTCGATTTCAAGACAACGGAGAATGACGTATACAACAACGGTACGACt > 1:298586/1‑148 (MQ=11) cacCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCa < 2:128113/90‑1 (MQ=11) cacCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCa > 1:128113/1‑90 (MQ=11) acCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg < 7:268376/149‑1 (MQ=34) acCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCGAGTACAACGGCCAAACGATTTCCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTGCCGACCCCGGCGAATGACGTCTACAACAACCGTTCGACt > 1:233384/1‑144 (MQ=11) acCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAATCCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 8:117794/146‑1 (MQ=11) acCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAGCCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 7:117794/1‑146 (MQ=11) acCGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCat > 4:46404/1‑148 (MQ=255) cGTGACCCTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAGACCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg > 1:274998/1‑147 (MQ=11) cccTGAGCAACCCTGCCC‑‑AGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCAc > 5:194107/1‑148 (MQ=11) ccTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGTGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa < 6:67064/149‑1 (MQ=37) tGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc > 8:184906/1‑149 (MQ=37) aGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga < 4:266767/149‑1 (MQ=37) gCAATCCTGCCC‑‑AGACTCCTGTGACAGTGACCCTGTCCAACGGCCTAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGGGTCGATTTCCAGACCCCGGCGAATGACGTCTAGAACAACGGTTCGACTGTCAGTGTCACCATCga < 5:174293/148‑1 (MQ=11) gCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCTACGGCCAAACCATTACCGTTTAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga < 7:151342/148‑1 (MQ=255) cAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGTTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgaga < 8:111970/149‑1 (MQ=37) aTCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc > 7:199470/1‑149 (MQ=37) | GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCC‑‑AGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAC > NC_002947/196163‑196453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |