| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 7.4% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 7.4% | 436.2 / 15.3 | 162 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (70/79); new base T (7/5); total (78/84) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.59e-01 | |||||||||||
Only 100 of 163 total aligned reads displayed.
CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT > NC_002947/196911‑197178 | cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCcaca < 1:107955/149‑1 (MQ=11) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg < 3:20703/149‑1 (MQ=31) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 5:33007/149‑1 (MQ=32) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGAAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 3:239633/149‑1 (MQ=17) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCTGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGt > 1:104894/1‑148 (MQ=17) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:52817/149‑1 (MQ=34) cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 4:296912/149‑1 (MQ=33) cgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGCCCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGCCGTCTACCACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 8:254103/2‑148 (MQ=9) cgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 8:66993/146‑1 (MQ=14) cgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 7:66993/2‑147 (MQ=14) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 6:152758/1‑148 (MQ=32) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 6:108979/1‑148 (MQ=32) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc > 4:283955/1‑148 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCGGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 1:316993/149‑1 (MQ=17) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa < 1:141850/137‑1 (MQ=32) cTGTCCAACGGGCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCAGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 1:247374/1‑149 (MQ=12) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc > 1:134759/1‑145 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 2:134759/145‑1 (MQ=32) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 4:205998/139‑1 (MQ=32) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 3:205998/1‑139 (MQ=32) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 1:320981/140‑1 (MQ=32) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 2:320981/1‑140 (MQ=32) tCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc < 1:276461/149‑1 (MQ=32) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt > 4:200293/1‑149 (MQ=32) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt > 2:84289/1‑149 (MQ=32) cGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCTGCGAATTACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAATTCGAGCAACTGACCCCGAATc < 3:83787/149‑1 (MQ=16) ggacAAACAATTAGCCTTGAAGCCTGAAAGACCCATTGCAGC‑TTCGATTTACAGACCAAGTCGAATGACTTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 8:222416/146‑1 (MQ=11) ctccAAACCATTCCCGTTGAAGTCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 6:47925/147‑1 (MQ=19) cgaaaCCCTTACCGTTGAAGCCGGCAAGACCCCGCGCTGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGACAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa < 8:120043/147‑1 (MQ=11) ccAAACCATTACCGTTGAAGCCGGCAAGACCCAGGCCAGC‑GTCGATTTCCAGACCCCTTCGAATGACTTCTACAACAACGTTTCGACCGTCAGCGTCACCATCGATAACGCCACAGGCGGTAATTTCGAGCAAGTGACCCCGAATCCGa < 4:262494/149‑1 (MQ=11) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc > 8:63128/1‑149 (MQ=34) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc > 2:126834/1‑149 (MQ=34) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGGGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc > 5:44893/1‑149 (MQ=37) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc < 3:292887/149‑1 (MQ=37) tACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 3:274920/1‑148 (MQ=37) aCCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTc < 1:84289/148‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 7:70229/127‑1 (MQ=32) ccGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 7:24712/1‑146 (MQ=37) cGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa < 7:40269/149‑1 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 5:284226/1‑148 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCCGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCCCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAACCCGAATCAGACCCCGGCTCAGAc > 2:164552/1‑148 (MQ=255) aaGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 3:255816/1‑148 (MQ=37) aGCCGGCAAGACGAAGGGCAGC‑GTCGATATCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAACGTCAGCGTCACCATCGATAACGCCACAGGCGGTAATTTAGATCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa < 7:131498/149‑1 (MQ=11) aGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCCCAGGCGGTAATATCGAGCAACTGACCCCGACTCAGACCCCGGCTCAGGCCACGa > 2:62112/1‑149 (MQ=11) gCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt > 8:15969/1‑149 (MQ=37) ccGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTAACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt > 4:299973/1‑148 (MQ=37) gCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 3:104697/149‑1 (MQ=37) ccAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGATCACGATCAACGACTCgg < 7:47663/149‑1 (MQ=21) ccAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 5:252705/1‑149 (MQ=34) ccAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 2:178498/1‑149 (MQ=34) ccAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 3:112662/1‑149 (MQ=34) aGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 5:328077/149‑1 (MQ=34) gC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcc < 1:22574/149‑1 (MQ=38) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCCCCATCGAGACCGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAATACGACCCCGGCTCAGACCACGATCAACGCCTCGGTAGATGcccc > 6:90686/1‑147 (MQ=11) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGTCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca < 4:112662/148‑1 (MQ=38) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac < 2:213265/149‑1 (MQ=39) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTCCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 4:248859/1‑140 (MQ=21) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTCCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 3:248859/140‑1 (MQ=21) gacttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac > 2:80432/4‑149 (MQ=255) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc < 8:289116/142‑1 (MQ=21) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACAGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc > 7:289116/1‑142 (MQ=37) ttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 5:323198/138‑1 (MQ=11) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 3:168482/1‑122 (MQ=35) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 4:168482/122‑1 (MQ=35) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 2:90730/1‑122 (MQ=35) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc > 8:232420/1‑149 (MQ=39) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 4:51831/127‑1 (MQ=35) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 3:51831/1‑127 (MQ=35) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa < 3:151285/149‑1 (MQ=39) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg < 5:160718/123‑1 (MQ=35) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg > 6:9710/1‑149 (MQ=39) gAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 6:222149/149‑1 (MQ=38) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc < 1:92881/130‑1 (MQ=38) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc > 2:92881/1‑130 (MQ=38) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACACCGGCTCAGACCACGATCAACGACTCGGTCGATGACACCACCGCGACCCTGACGGCGAGCCCGt > 3:83190/1‑149 (MQ=255) tCTACAACAACGGTTCGACCTTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 6:314286/1‑149 (MQ=37) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 6:282411/1‑149 (MQ=37) tCTACAACAACGGTTCGACCGTCAGCGTAACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 3:299973/149‑1 (MQ=37) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 1:278177/111‑1 (MQ=32) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 2:278177/1‑111 (MQ=32) acaacaACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa < 1:87873/93‑1 (MQ=33) caacaaCGGTTCGACCGTCAGCGTCACCATCGGGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGt < 6:40018/147‑1 (MQ=37) aacaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGt > 8:276465/1‑142 (MQ=21) aacaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 8:44113/149‑1 (MQ=21) aacaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCCGACGGCGAGCCCGt < 7:276465/142‑1 (MQ=255) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 2:300893/71‑1 (MQ=34) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 5:11694/1‑149 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 5:152758/149‑1 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 6:326627/1‑149 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 8:306392/1‑147 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 8:178977/1‑139 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 7:178977/139‑1 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 7:306392/149‑1 (MQ=37) gTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc < 1:168194/149‑1 (MQ=21) cttCCACCGTCAGCGTCACCATCCAGACCGCCACAGGCGGTAATTTCGACCAACTCACCCCCAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc < 2:166521/148‑1 (MQ=11) cGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt < 2:226719/52‑1 (MQ=35) cGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 1:226719/1‑52 (MQ=35) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 6:91171/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 3:282162/148‑1 (MQ=37) ccGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 4:56855/1‑148 (MQ=37) | CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGC‑GTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT > NC_002947/196911‑197178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |