Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,598,837 | C→T | 12.2% | intergenic (‑76/+55) | dctB ← / ← bglX | C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,598,837 | 0 | C | T | 12.2% | 124.7 / 7.7 | 49 | intergenic (‑76/+55) | dctB/bglX | C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase |
Reads supporting (aligned to +/- strand): ref base C (22/21); new base T (4/2); total (26/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.02e-01 |
TGAGTGCGGTACCCAGCACGATCAGCAGGGTGATCAGCCCCAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTGCAACT > NC_002947/1598692‑1598983 | tGAGTGCGGTACCCAGCACGATCAGCAGGGTGATCAGCCCCAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCAcc > 7:107041/1‑149 (MQ=255) cccAGCACGATCAGCAGGGTGATCAGCCCCAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGTTGGAGAAGGGGATGGGGAGAAGTCGGGCCCTGCCTCTTCGCGGGTAAACCCGCGCATACAGGAACTCTccagca > 1:271274/1‑149 (MQ=255) aGCACGATCAGCAGGGTGATCAGCCCCAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGttt > 2:168158/1‑149 (MQ=255) agcagGGTGATCAGCCCCAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCcgcg < 3:146882/148‑1 (MQ=255) agcagGGTGATCAGCCCCAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGCAGGCGCGGTTTTACCcgcg > 4:13038/1‑148 (MQ=255) cagGGTGATCAGCCCCAGACGCAGTGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTGCTGCAGAGTACCTGTAg < 8:148282/129‑1 (MQ=37) cagGGTGATCAGCCCCAGACGCAGTGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTGCTGCAGAGTACCTGTAg > 7:148282/1‑129 (MQ=37) aTCAGCCCCAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCg < 8:107041/148‑1 (MQ=255) ccccAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCAGatcgg < 4:286715/149‑5 (MQ=255) ccccAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTACGCGGGTAAACCCGCGCCTACAGGTAATCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGCCCGGAACAg > 5:171561/1‑149 (MQ=255) ccAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAggc > 7:6715/1‑149 (MQ=255) aCGCAGGGCGCGAAAGGAAATGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGt < 8:307577/109‑1 (MQ=255) aCGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCAGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGt > 7:307577/1‑109 (MQ=255) gggCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCttttt < 1:324549/149‑1 (MQ=255) ggCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCCCCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAggc > 5:8504/1‑139 (MQ=255) ggCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAggc < 6:8504/139‑1 (MQ=255) gcgcGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGCAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCa < 3:13038/149‑1 (MQ=255) gcgcGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGGCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCa < 7:109050/149‑1 (MQ=255) gAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGCCCTTTTTCAGTc > 7:39632/1‑148 (MQ=255) aaaGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGt > 3:147000/1‑146 (MQ=255) aaaGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGt < 4:147000/146‑1 (MQ=255) aaaaGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCaa > 6:28893/1‑149 (MQ=255) gggCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCa < 3:96180/149‑1 (MQ=255) gCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAATCCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCaaa < 2:84425/149‑1 (MQ=255) gggggCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGctc < 8:6715/148‑1 (MQ=255) ggCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCCCCTGTAGGCGCGGTTTAACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCaaa > 4:217759/1‑131 (MQ=255) ggCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTAACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCaaa < 3:217759/131‑1 (MQ=255) g‑tgg‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTg < 1:168158/149‑1 (MQ=255) g‑‑‑gATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTggg < 5:28893/148‑1 (MQ=255) ggggCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGc > 8:15855/1‑149 (MQ=255) gggCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGcc < 7:15855/149‑1 (MQ=255) ggCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTGTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGccc > 1:205139/1‑149 (MQ=255) ctgcctCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCGTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTAc > 7:174771/1‑149 (MQ=255) cctCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTg > 6:1577/1‑149 (MQ=255) ctctTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGc < 3:299755/140‑1 (MQ=255) ctctTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGc > 4:299755/1‑140 (MQ=255) gctggTAAAACCGCGCCTACAGGTACTCTGAAGCAACTGTATGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTTCTGCTGCACCGCCTTGGAATCCAGCCCTACCTGGACATTg < 2:271274/146‑1 (MQ=255) gggTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAggcgg < 3:195506/76‑1 (MQ=255) gggTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAggcgg > 4:195506/1‑76 (MQ=255) aaaaCCGCGCCTACAGGTGCTGCAGAGTACCTGTAGGCGCGGGTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGATCTGCTGCTGCACCGCCTgg > 3:52106/1‑119 (MQ=18) aaCCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTccc > 5:326961/1‑149 (MQ=255) aaCCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGCCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTccc < 8:39632/149‑1 (MQ=255) gcgcCTACAGGTGCTGCAGAGTACCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGt > 4:316359/1‑149 (MQ=37) ccTACAGGTGCTGCAGAGTACCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGa > 6:141317/1‑135 (MQ=25) ccTACAGGTGCTGCAGAGTACCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGa < 5:141317/135‑1 (MQ=25) tACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCgg > 4:128821/1‑148 (MQ=255) tctGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTg > 2:34402/1‑149 (MQ=255) tGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCa < 6:36999/59‑1 (MQ=255) tGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCa > 5:36999/1‑59 (MQ=255) tGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTGc > 6:185268/1‑148 (MQ=255) gcagcaCCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCGCCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTGCaa > 1:106303/1‑149 (MQ=255) gcagcaCCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGAc > 8:123611/1‑116 (MQ=255) cagcaCCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTGCaa < 6:160670/148‑1 (MQ=255) cagcaCCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTGCAAc > 7:178485/1‑149 (MQ=255) agcaCCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTGCAACt > 6:170610/1‑149 (MQ=255) agcaCCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTGCAACt < 2:205139/149‑1 (MQ=255) | TGAGTGCGGTACCCAGCACGATCAGCAGGGTGATCAGCCCCAGACGCAGGGCGCGAAAGGAAAAGGGCATCGGGGGCGGATCCGGT‑‑‑‑‑‑‑‑‑GG‑TGG‑‑‑GATGTCGGGGCCTGCCTCTTCGCGGGTAAACCCGCGCCTACAGGTACTCTGCAGCACCTGTAGGCGCGGTTTTACCCGCGAAAAGGCCGGAACAGGCGGCCTTTTTCAGTCAAAGCAATTCAAAGCTCTGCTGCTGCACCGCCTGGGAATCCAGCCCTACCTGGACATTGAACTCCCCTGGTTCGGCAACCCGCTGCAACT > NC_002947/1598692‑1598983 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |