Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,606,408 | A→T | 7.7% | intergenic (‑158/+53) | PP_1407 ← / ← PP_t64 | sulfate transporter/tRNA‑Gly |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,606,408 | 0 | A | T | 7.7% | 150.0 / 3.2 | 52 | intergenic (‑158/+53) | PP_1407/PP_t64 | sulfate transporter/tRNA‑Gly |
Reads supporting (aligned to +/- strand): ref base A (24/24); new base T (2/2); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01 |
GTTTCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGACTTTTTAC > NC_002947/1606269‑1606554 | gTTTCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCATAGGCCCGATGCTCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCtt < 7:304702/148‑1 (MQ=255) aCGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCTTGGCTCCttttttcg < 2:53278/149‑5 (MQ=255) aCGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACt > 4:266248/1‑149 (MQ=255) aaTCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCg < 7:164082/149‑1 (MQ=255) tGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGt > 6:150521/1‑149 (MQ=255) atatCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTg < 7:252772/149‑1 (MQ=255) atCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGa > 8:300073/1‑149 (MQ=255) tCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGaa > 4:45210/1‑149 (MQ=255) tCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGaa > 4:240251/1‑149 (MQ=255) acaAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCAt > 8:6718/1‑149 (MQ=255) caAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGCGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAATGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATg > 5:192579/1‑149 (MQ=255) gCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGa > 2:114643/1‑119 (MQ=255) gCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCgg < 3:45210/149‑1 (MQ=255) gTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGAc < 5:97812/149‑1 (MQ=255) gTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGAc > 6:97812/1‑149 (MQ=255) tttCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACt > 5:263854/1‑149 (MQ=255) cTTGCGCACGCAAAGGCCCGATGCGCTTTGAAGCGGATCGGTTGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGAt < 2:251685/149‑1 (MQ=255) cTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGAt < 3:266248/149‑1 (MQ=255) caAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCggg < 3:240251/149‑1 (MQ=255) caAAGGCCAGATGCGATTTGTAGCGGTTCGGTTGGTATTTGTCCATGGGCCAGGTCAAGGCAGCATGAAAAACGAAAAAAGGAGCCAAGGATCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCggt < 6:192579/149‑2 (MQ=255) aaaGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCggg > 1:84424/1‑148 (MQ=255) gCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCAT‑GGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCg < 1:179418/123‑1 (MQ=255) gCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCAT‑GGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCg > 2:179418/1‑123 (MQ=255) tgcgtGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAgg < 4:65849/144‑1 (MQ=255) tgagtgggcATTGATGGTGTTCGGTTGGTAATTGGCCATGGTCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCTATGACGTTGCTGTAACGCCATGCTGGACTGCGATGTTGAGCGGGTAGAgg < 6:183680/141‑1 (MQ=255) gcATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGaa < 7:6718/149‑1 (MQ=255) aTTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAAcc > 2:76399/1‑149 (MQ=255) gCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAAc > 2:322291/1‑149 (MQ=255) ggATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACt > 3:262233/1‑148 (MQ=255) gTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCtt < 7:300073/149‑1 (MQ=255) tGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTg > 2:58158/1‑149 (MQ=255) gTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCtt < 4:125551/145‑1 (MQ=255) gTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCtt > 3:125551/1‑145 (MQ=255) ccATGGGCCAGGTCAAGGCAGGATGAAAAAAGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCg > 4:311796/1‑149 (MQ=255) ggCCAGGTCAAGGCAGGCAGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACACCATGCGGGACTGCGATGGGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGtttt < 2:247919/148‑1 (MQ=255) gCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAGGCTTTCGTTTTGc < 2:84424/149‑1 (MQ=255) gTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACt > 1:330610/1‑148 (MQ=255) aaGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGc > 7:258465/1‑141 (MQ=255) aaGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGc < 8:258465/141‑1 (MQ=255) gAAAAACGAAAAAAGGAGCCATGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCa > 7:228672/1‑149 (MQ=255) aaaaCGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCAt < 4:262233/148‑1 (MQ=255) aaccGAAAACAGCAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGtttt < 4:20243/123‑1 (MQ=255) aaaCGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCt > 7:170008/1‑149 (MQ=255) gAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGc > 4:135419/1‑149 (MQ=255) caaaaGGAGCCTTGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCg > 4:75792/2‑116 (MQ=255) caaaaGGAGCCTTGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCg < 3:75792/115‑1 (MQ=255) aaaaaGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTc < 2:330610/149‑1 (MQ=255) aGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGACt > 3:184503/1‑149 (MQ=255) gCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCt < 5:317087/135‑1 (MQ=255) gCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCt > 6:317087/1‑135 (MQ=255) gCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGACttttt < 1:76399/149‑1 (MQ=255) cAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGACTTTTTAc < 2:98489/149‑1 (MQ=255) | GTTTCACGAATCCAGTGAGCATATCCGCCACAAGCCGTTTCGCTTGCGCACGCAAAGGCCCGATGCGCATTGAAGCGGATCGGTGGGTAATTGGCCATGGGCCAGGTCAAGGCAGGATGAAAAACGAAAAAAGGAGCCAAGGCTCCTTTTGACTGCGATGACGTTGCTGGAACGCCATGCGGGACTGCGATGTGGAGCGGGTAGAGGGAATCGAACCCTCAACTAAAGCTTGGGAAGCTTTCGTTTTGCCACTAAACTATACCCGCATCTGAGCTCGACTTTTTAC > NC_002947/1606269‑1606554 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |