| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,185 | C→T | 5.6% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,185 | 0 | C | T | 5.6% | 312.3 / 6.0 | 108 | T897T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (47/54); new base T (3/3); total (51/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.04e-01 | |||||||||||
Only 100 of 115 total aligned reads displayed.
GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCG > NC_002947/197037‑197333 | gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCAcc > 4:216005/1‑149 (MQ=38) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTa > 2:76341/1‑149 (MQ=37) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTa > 2:117115/1‑149 (MQ=37) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTGATCACTTacac > 6:326010/1‑149 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTGATCACTTaca < 1:62112/148‑1 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTaca < 4:230864/148‑1 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTGATCACTTACAcc < 4:157388/149‑1 (MQ=17) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACAcc > 7:164124/1‑149 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACAcc > 8:163272/1‑149 (MQ=37) aTCGAGGACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGt > 4:126729/1‑149 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGa < 4:255816/148‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTGATGACTTCCCCCGTGAc > 1:282860/1‑148 (MQ=11) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGAcc > 5:73164/1‑149 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGAcc > 6:275450/1‑149 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGTCG‑GCGTAATCACCTACACCGTGACCCt < 1:178498/149‑1 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCt > 1:258993/1‑149 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTGATCACTTACACCGTGACCCTGa < 5:326010/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGa < 1:117115/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGa < 2:247374/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGa < 3:216005/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAg < 2:115064/149‑1 (MQ=37) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTGATCACTTACACCGTGACCCTGAGc > 3:72713/1‑148 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGa > 3:277783/1‑146 (MQ=37) cacaGGCGGTAATTTCGAGCAACTGACCCCGAAACCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACTGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGa < 4:277783/146‑1 (MQ=255) acaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCaa < 3:126729/149‑1 (MQ=37) acaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCaa > 3:112539/1‑149 (MQ=37) caGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCGGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAAt < 8:48127/149‑1 (MQ=25) caGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAAt > 6:74437/1‑149 (MQ=35) aGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATc < 7:86400/149‑1 (MQ=25) aGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGAATCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAAta > 7:290654/1‑148 (MQ=25) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 6:11694/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 6:73164/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 4:73094/149‑1 (MQ=34) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACAcc > 4:79613/1‑127 (MQ=35) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACAcc < 3:79613/127‑1 (MQ=35) tttCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGa < 2:258993/149‑1 (MQ=21) ttCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 6:150502/1‑149 (MQ=21) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc > 4:243563/1‑149 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 8:164124/149‑1 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 5:275450/149‑1 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 4:112539/149‑1 (MQ=34) aGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 1:80432/149‑1 (MQ=21) aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 2:15198/1‑148 (MQ=34) aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga < 5:282411/149‑3 (MQ=17) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGt > 8:24864/1‑149 (MQ=39) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGa > 3:186476/1‑119 (MQ=35) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGa < 4:186476/119‑1 (MQ=35) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 1:126834/149‑1 (MQ=39) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 8:264486/1‑149 (MQ=39) cccGAACCCGACCCCGGCTCAGTCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg < 6:279233/140‑1 (MQ=17) cccGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 1:194845/1‑135 (MQ=17) cccGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc < 2:194845/135‑1 (MQ=17) cccGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg > 5:279233/1‑140 (MQ=17) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTa > 6:101701/1‑104 (MQ=35) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTa < 5:101701/104‑1 (MQ=35) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 5:44744/144‑1 (MQ=38) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACATACACCGTGACCCTGAGCAAACCTccc > 2:10928/1‑129 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAACCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 7:86598/1‑148 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCt > 4:144821/1‑125 (MQ=35) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCt < 3:144821/125‑1 (MQ=35) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc < 7:264486/149‑1 (MQ=39) tCCGACCCCGGCTCACCCCACGATCACCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGt < 8:265756/149‑1 (MQ=255) cccGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATc < 2:206770/113‑1 (MQ=33) cccGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATc > 1:206770/1‑113 (MQ=33) cGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGAcc < 6:220715/101‑1 (MQ=32) aGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGt > 5:107383/1‑148 (MQ=37) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGGGAGCGTAATCACCTACACCGTGACCCTGAGCAATCCt < 1:49233/106‑1 (MQ=255) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCt > 2:49233/1‑105 (MQ=32) ccAGGATGAACGAGTCTTTCGATGCCACCACCTCGACCCTGACGGCGAGCCCTTGTGTCACCGAAGTCG‑GCGTAATCACCTACACCGTGACCCTGATGAATGGTGCGGAGACGCCGGTAACCGTGACCCTGTCGAACGGCCTGGtcat < 6:73142/148‑1 (MQ=11) cGATCAACGACTCGGTCGATGCCACCACCGCGACCATGACGGCGAGCCCGTCTGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTTAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACt < 7:122192/149‑1 (MQ=255) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGTTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGACCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTg < 6:107383/149‑1 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 4:148954/1‑149 (MQ=255) aaCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTg > 5:308926/1‑148 (MQ=255) aaCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTg > 2:117520/1‑148 (MQ=255) cTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCg < 1:76341/149‑1 (MQ=255) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGc > 5:196218/1‑148 (MQ=255) tGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAAcc > 3:310682/1‑148 (MQ=255) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAgg < 5:74437/149‑1 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 6:16972/1‑147 (MQ=255) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGt > 2:270358/1‑94 (MQ=37) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGt < 1:270358/94‑1 (MQ=37) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTc > 7:51239/1‑149 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 3:148954/147‑1 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 8:51239/149‑1 (MQ=255) gCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 4:83190/149‑1 (MQ=255) cccGTCGTTCACCTAAGGCG‑GCGTAATCACCTACACCTTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt < 6:320459/138‑1 (MQ=255) cccGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCAAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt > 5:320459/1‑138 (MQ=255) gTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGACATAACAGTTGAAGCCGGCAATACCCAGGGCa > 6:58537/1‑121 (MQ=255) aCCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGCCCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt > 2:96761/1‑149 (MQ=255) ggcg‑gcGTAATCACCTACACCGTGACCCTTAGCAATCCTGCACAGACGCCTGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaa < 3:165889/149‑1 (MQ=255) g‑gcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAcaacaa < 1:33421/149‑1 (MQ=37) gcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACaacaac < 1:134240/149‑1 (MQ=37) cgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACg < 2:254655/149‑1 (MQ=37) tCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGa < 6:297675/82‑1 (MQ=38) aCCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGa < 1:117520/148‑1 (MQ=34) ccTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 7:196547/110‑1 (MQ=35) ccTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 8:196547/1‑110 (MQ=35) ccTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCGGCCAATGACGTCTACAACAACGGTTCGAcc > 1:304400/1‑149 (MQ=21) cTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 4:228105/127‑1 (MQ=35) cTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc > 3:228105/1‑127 (MQ=35) | GCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCG‑GCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCG > NC_002947/197037‑197333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |