Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,659,042 A→G 7.1% V51A (GTG→GCG)  PP_1451 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,659,0420AG 7.1% 159.5 / 2.4 56V51A (GTG→GCG) PP_1451hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (24/28);  new base G (2/2);  total (26/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01

CCAGTCCAGCCAGTACAAGCCCTCGGGGGTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGAAAAGGGCAAGCAACCAGCG  >  NC_002947/1658897‑1659190
                                                                                                                                                  |                                                                                                                                                    
ccAGTCCAGCCAGTACAAGCCCTCGGGGGTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCa                                                                                                                                                   <  6:137009/149‑1 (MQ=255)
        gccagTACAAGCCCTCGGGGGTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTg                                                                                                                                           <  6:81974/149‑1 (MQ=255)
         ccagTACAAGCCCTCGGGGGTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGt                                                                                                                                          <  8:156831/149‑1 (MQ=255)
            gTACAAGCCCTCGGGGGTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGa                                                                                                                                       >  2:12929/1‑149 (MQ=255)
                    ccTCGGGGGTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGt                                                                                                                               >  2:114791/1‑149 (MQ=255)
                        gggggTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACAGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCa                                                                                                                           >  8:276580/1‑149 (MQ=255)
                         ggggTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCAt                                                                                                                          <  5:55028/149‑1 (MQ=255)
                         ggggTTTTCTTGACGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCAGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCAt                                                                                                                          <  4:128858/149‑1 (MQ=255)
                                    ggcGCCGTCGCGTTCCTTGGCGCCCTTGGGCTGCGTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTtgct                                                                                                                  <  4:183116/144‑1 (MQ=255)
                                    gTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCCGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTtgctgc                                                                                                                >  7:102600/1‑148 (MQ=255)
                                    gTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTtgct                                                                                                                  <  3:292096/146‑1 (MQ=255)
                                         cTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCACCAGCGAGATGCGGTAGGTTTTCAGCGCATCGCCGCGGCTGATCAACTGCAGCCGCCGCTCCGCCTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCt                                                                                                                      >  1:39424/1‑138 (MQ=255)
                                         cTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCt                                                                                                                      <  2:39424/137‑1 (MQ=255)
                                          ttCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGc                                                                                                          >  6:322675/1‑148 (MQ=255)
                                            cgcgTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGa                                                                                                        <  6:252194/148‑1 (MQ=255)
                                               gTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGa                                                                                                    <  1:238605/149‑1 (MQ=255)
                                                      ggCGCCCTTGGACTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTgc                                                                                              <  1:114791/148‑1 (MQ=255)
                                                       gcgcCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTgcgc                                                                                            >  3:106575/1‑149 (MQ=255)
                                                       gcgcCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTgcgc                                                                                            <  7:276580/149‑1 (MQ=255)
                                                                     ctTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGc                                                                               <  2:53668/148‑1 (MQ=255)
                                                                     ctTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCt                                                                              >  5:122735/1‑149 (MQ=255)
                                                                       tGCCCAGCGAGATGCGGTAGGTTTTCAGCGCCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTg                                                                            >  1:28746/1‑149 (MQ=255)
                                                                         cccAGCGAGCTGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGc                                                                           <  2:240608/148‑1 (MQ=255)
                                                                            cAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGCCTTGATCACCAGCCCCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGga                                                                        >  3:33902/1‑149 (MQ=255)
                                                                               cGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCg                                                                                                                                        <  2:316287/82‑1 (MQ=255)
                                                                               cGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCg                                                                                                                                        >  1:316287/1‑82 (MQ=255)
                                                                                gagaTGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGgatgat                                                                    >  7:158465/1‑149 (MQ=255)
                                                                                  gaTGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATgg                                                                  <  4:106575/149‑1 (MQ=255)
                                                                                   aTGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGt                                                                 >  8:89224/1‑149 (MQ=255)
                                                                                       ggTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGCCGCGGGCTTGCGGATGATGGTTTCg                                                             >  5:95245/1‑149 (MQ=255)
                                                                                       ggTAGGTTTTCAGCGGCTCGCCGCGGCTCATCAACTGCACGCGGCGCTCCGACTTGAACACCAGCACCGTGTCGATCAACGGTTGCAAGGCTTGCTGCGAAGGCGAGGGAGTTAGCGCTGCCGGCGCGGGCTTGCGGATGAAGGTTTCg                                                             >  5:36642/1‑149 (MQ=255)
                                                                                           ggTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTg                                                          <  2:28746/148‑1 (MQ=255)
                                                                                             ttttCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAg                                                       >  2:285666/1‑149 (MQ=255)
                                                                                             ttttCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAg                                                       <  1:163789/149‑1 (MQ=255)
                                                                                              tttCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGa                                                                                                    <  4:280977/103‑1 (MQ=255)
                                                                                              tttCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGa                                                                                                    >  3:280977/1‑103 (MQ=255)
                                                                                                   gCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGgccgcc                                                 >  1:15803/1‑149 (MQ=255)
                                                                                                    cGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGc                                                                           >  4:98585/1‑122 (MQ=255)
                                                                                                    cGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGc                                                                           <  3:98585/122‑1 (MQ=255)
                                                                                                          gccgcGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGaca                                          >  8:243889/1‑149 (MQ=255)
                                                                                                               ggCTGATCAACAGCAGGCGGAGCTCCTACATGATCACGACCACCGTTTCGATCAACGGTATCATGGCTTGCTGCGAAGGCTAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAg                                     <  4:46928/149‑1 (MQ=255)
                                                                                                                    aTCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGAACAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAAc                                >  4:41867/1‑149 (MQ=255)
                                                                                                                            cAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAgg                         <  5:322675/148‑1 (MQ=255)
                                                                                                                             aGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGTAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCTAGGTAACGCAAAGGCa                       <  8:102600/149‑1 (MQ=255)
                                                                                                                                  gcgcTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGaaaa                  <  1:285666/149‑1 (MQ=255)
                                                                                                                                  gcgcTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGaaaa                  <  2:15803/149‑1 (MQ=255)
                                                                                                                                      tCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCaa                            <  2:114838/135‑1 (MQ=255)
                                                                                                                                      tCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCaa                            >  1:114838/1‑135 (MQ=255)
                                                                                                                                         gACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGAAAAGGgcaag           <  3:41867/149‑1 (MQ=255)
                                                                                                                                           cTTGATCGCCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACg                               >  6:98623/1‑127 (MQ=255)
                                                                                                                                           cTTGATCGCCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACg                               >  6:103319/1‑127 (MQ=255)
                                                                                                                                           cTTGATCGCCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACg                               <  5:98623/127‑1 (MQ=255)
                                                                                                                                           cTTGATCGCCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACg                               <  5:103319/127‑1 (MQ=255)
                                                                                                                                            ttGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGAAAAGGgcaagcaa        >  8:87589/1‑149 (MQ=255)
                                                                                                                                               aTCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGAAAAGGGCAAGCAAcc      <  6:122735/148‑1 (MQ=255)
                                                                                                                                                tCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGAAAAGGGCAAGCAACCAg    >  2:55163/1‑149 (MQ=255)
                                                                                                                                                  aCCAGCACCTTGTCGATCAACGGTTGCATGGCTTCCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGAGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGAAAAGGGCAAGCAACCAgcg  >  6:32207/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CCAGTCCAGCCAGTACAAGCCCTCGGGGGTTTTCTTGTCGCCTTCGCGTTCCTTGGCGCCCTTGGGCTGCTTGCCCAGCGAGATGCGGTAGGTTTTCAGCGGCTCGCCGCGGCTGATCAACTGCAGGCGGCGCTCCGACTTGATCACCAGCACCTTGTCGATCAACGGTTGCATGGCTTGCTGCGAAGGCGAGGGAGTTTGCGCTGCCGGCGCGGGCTTGCGGATGATGGTTTCGGTGAAGGCCGCCTGGGACACCGAGGTAACGCAAAGGCAGAAAAGGGCAAGCAACCAGCG  >  NC_002947/1658897‑1659190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: