Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,731,535 | G→C | 11.0% | R779G (CGC→GGC) | PP_1526 ← | beta‑(1‑3)‑glucosyl transferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,731,535 | 0 | G | C | 11.0% | 152.1 / 6.6 | 54 | R779G (CGC→GGC) | PP_1526 | beta‑(1‑3)‑glucosyl transferase |
Reads supporting (aligned to +/- strand): ref base G (27/20); new base C (2/3); total (31/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.44e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.55e-01 |
GCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCTTGCCGACC > NC_002947/1731395‑1731683 | gcgcATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCCGCACGCCGAAGAACg < 1:254135/149‑1 (MQ=255) gcgcATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCCGCACGCCGAAGAACg < 5:307755/149‑1 (MQ=255) cATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCa < 7:216280/149‑1 (MQ=255) tCCGAACTCGGCAGCCCCTGCACCAGGTAGATGCCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgct > 7:142047/1‑149 (MQ=255) tCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgct > 7:228088/1‑149 (MQ=255) tCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgct > 6:30827/1‑149 (MQ=255) gAACTCGGCAGCCCCTGCACCAGGTAGATAGCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgctgc > 1:30176/1‑148 (MQ=255) gAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCAtgctgc < 2:30176/148‑1 (MQ=255) cACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATa < 4:162465/147‑1 (MQ=255) cAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCCGCACGCCGAAGAACg < 1:139414/119‑1 (MQ=255) cAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCCGCACGCCGAAGAACg > 2:139414/1‑119 (MQ=255) aGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTAc > 1:221269/1‑149 (MQ=255) ccAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGctgctg < 4:227863/119‑1 (MQ=255) ccAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGctgctg > 3:227863/1‑119 (MQ=255) ccAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATAc < 6:262897/134‑1 (MQ=255) ccAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATAc > 5:262897/1‑134 (MQ=255) ccAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGc > 4:138326/1‑148 (MQ=255) aCGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATg < 5:30827/149‑1 (MQ=255) gccgcGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGgt > 6:301665/1‑149 (MQ=255) cgcgCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGgtgt < 2:14079/149‑1 (MQ=255) gcgcCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATa < 2:68283/125‑1 (MQ=255) gcgcCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATa > 1:68283/1‑125 (MQ=255) cccACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGa > 5:213031/1‑148 (MQ=255) cacaGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTAcc > 4:33008/1‑126 (MQ=255) cacaGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTAcc < 3:33008/126‑1 (MQ=255) cacaGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAg > 3:175550/1‑149 (MQ=255) acaGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGt < 8:142047/149‑1 (MQ=255) gcaCCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGGGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGAAGGTGTGCGAAAGTGCCAGc > 2:96144/1‑149 (MQ=255) gaACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGAGACAGTGACAGCCCGGCCAgcg > 4:116928/1‑149 (MQ=255) aCAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGt > 6:166967/1‑131 (MQ=255) aCAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGt < 5:166967/131‑1 (MQ=255) ctctTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTg > 5:186779/1‑149 (MQ=255) ctTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGc > 5:294506/1‑148 (MQ=255) tCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCg > 1:83628/1‑147 (MQ=255) cACGGGCTTCGGAAATCGCCACCAGCAACGGTTGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTTAAGAAACCATACAGTACCGCCTTGGCGTTGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGa < 8:197190/147‑1 (MQ=255) cGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCtt < 2:83628/148‑1 (MQ=255) gAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAg > 2:161050/1‑149 (MQ=255) accaGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGCAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCAcccc > 3:181627/1‑149 (MQ=255) ccATGGCTGTCAGCGTTCTTCGGCGTGCAGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTcg > 1:183018/1‑149 (MQ=255) ccATGGCTGTCAGCGTTCTTCGGCGTGCAGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTCGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTcg > 1:188076/1‑149 (MQ=255) aTGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTcggc > 8:168991/1‑149 (MQ=255) gCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTcggcgg < 2:221269/148‑1 (MQ=255) cTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTa < 3:138326/149‑1 (MQ=255) tCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACa < 7:168991/148‑1 (MQ=255) aGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATcc < 5:33488/115‑1 (MQ=255) aGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATcc > 6:33488/1‑115 (MQ=255) aGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAgg > 4:44388/1‑148 (MQ=255) aGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAgg > 3:208917/1‑148 (MQ=255) gCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAgg > 4:119288/1‑147 (MQ=255) cGTTCTTCCGCACGCCGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAgg > 6:58970/1‑146 (MQ=255) ttcGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAgatgat > 2:228504/1‑149 (MQ=255) cGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATc < 8:228088/148‑1 (MQ=255) ggCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCtt < 4:175550/149‑1 (MQ=255) cGGATGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGTTGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCTTGCCGa < 3:116928/148‑1 (MQ=255) ggAAGAACGGCATGCTGCTGGTGAAGAAACGATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCTTGCCGAcc > 1:28943/1‑149 (MQ=255) ggAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCTTGCCGAcc < 1:161050/149‑1 (MQ=255) | GCGCATGTCCGAACTCGGCAGCCCCTGCACCAGGTAGATACCCAACGCCGCGCCCCACAGCAGCACCATGATGAACAGCTCTTCACGGGCTTCGGAAATCGCCACCAGCAACCCATGGCTGTCAGCGTTCTTCGGCGTGCGGAAGAACGGCATGCTGCTGGTGAAGAAACCATACAGTACCGCCTTGGCGATGGTGTGCGACAGTGCCAGCCCGGCCAGCGCAGCTGCGAAGGCATCCTTGAGGTTCACCCCCACCGCTCGGCGGTACAGGAAGATGATCTTGCCGACC > NC_002947/1731395‑1731683 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |