Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,780,712 | T→G | 8.3% | E211A (GAG→GCG) ‡ | dapC ← | N‑succinyl‑L,L‑diaminopimelate aminotransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,780,712 | 0 | T | G | 8.3% | 180.0 / 7.7 | 60 | E211A (GAG→GCG) ‡ | dapC | N‑succinyl‑L,L‑diaminopimelate aminotransferase |
Reads supporting (aligned to +/- strand): ref base T (27/28); new base G (2/3); total (29/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 |
GAAGCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATCTGGCAACGCTTCC > NC_002947/1780573‑1780850 | gaAGCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCGAGCTGTact > 3:130226/1‑147 (MQ=255) gaAGCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCGGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCGAGCTGTact < 4:29909/149‑3 (MQ=255) gCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCGAGCTGTacttcg < 4:130226/149‑6 (MQ=255) cGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACtcgt > 8:207280/1‑149 (MQ=255) cGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACtcgt > 8:199365/1‑149 (MQ=255) gTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTGCGACCAAGCTCGGCGCATTCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGt > 1:81934/1‑149 (MQ=255) ttGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTc > 8:249771/1‑149 (MQ=255) aGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTcgg > 1:67124/1‑129 (MQ=255) aGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTcgg < 2:67124/129‑1 (MQ=255) ttGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTc < 3:70665/146‑1 (MQ=255) ttGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTc > 4:70665/1‑146 (MQ=255) ggACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCa < 5:7466/148‑1 (MQ=255) gACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGc > 5:269905/1‑149 (MQ=255) aGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAg < 7:199365/149‑1 (MQ=255) gCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGGAGTCGTGTTCGTCAGCCAggg > 7:168441/1‑149 (MQ=255) gCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAggg > 6:314151/1‑149 (MQ=255) gCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAggg > 4:83213/1‑149 (MQ=255) tgGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAAt < 5:241582/149‑1 (MQ=255) gAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATc < 3:112435/148‑1 (MQ=255) gAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATc < 7:249771/148‑1 (MQ=255) aaCACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAg > 2:308892/1‑149 (MQ=255) aaCACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGAGTTCGTCAGCCAGGGCAATCAg > 2:163498/1‑149 (MQ=255) acacCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAAt < 4:136787/145‑1 (MQ=255) acacCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAAt > 3:136787/1‑145 (MQ=255) ccacGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGcttc < 5:216336/149‑1 (MQ=255) gCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCg > 6:176863/1‑118 (MQ=255) gCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCg < 5:176863/118‑1 (MQ=255) aGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAgg < 6:269905/149‑1 (MQ=255) aGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAgg < 4:206476/149‑1 (MQ=255) aGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAgg < 3:220753/149‑1 (MQ=255) gcAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGgtgt > 5:273668/1‑148 (MQ=255) gcAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGgtgt < 6:273668/148‑1 (MQ=255) aaaaTCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAgg > 2:300183/1‑142 (MQ=255) aaaaTCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAgg < 1:300183/142‑1 (MQ=255) aaTCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGGAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATc < 8:168441/149‑1 (MQ=255) tCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTAATCgg > 3:61451/1‑149 (MQ=255) ccAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAgcg > 4:106527/1‑148 (MQ=255) cAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCa > 8:187950/1‑149 (MQ=255) ggCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAg > 6:115996/1‑149 (MQ=255) ggCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAg < 7:25353/149‑1 (MQ=255) cATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGtt < 1:236740/149‑1 (MQ=255) tGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGc < 3:106527/149‑1 (MQ=255) gACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTgg < 7:187950/149‑1 (MQ=255) aCAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGc < 1:308892/149‑1 (MQ=255) cagcagGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCg < 5:314151/149‑1 (MQ=255) cagGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTGGTCAGCCATGGCAATCAGGTTCGTCAGGGTGTTCATAGGCAACAGCCCCCCGGTAGGGTTGCCGGGCCAg > 2:265747/1‑148 (MQ=255) ggCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGcac < 2:81934/149‑1 (MQ=255) cgcATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATCt < 4:312044/149‑1 (MQ=255) gcATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATCTg > 6:4942/1‑149 (MQ=255) cATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATCTgg < 7:207280/149‑1 (MQ=255) cTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCacaggaaca > 3:170658/1‑137 (MQ=255) cTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCacaggaaca < 4:170658/137‑1 (MQ=255) tcgtcgAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGc < 8:225035/118‑1 (MQ=255) tcgtcgAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGc > 7:225035/1‑118 (MQ=255) gtgctACAGCGAGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATc > 2:163295/5‑136 (MQ=255) gtgctACAGCGAGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATc < 1:163295/132‑1 (MQ=255) gAAGTACAGCTCGCTGTAGCACTCGTCGGCGTCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATCTGGCAACGCTTc > 3:52019/1‑148 (MQ=255) gAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATCTGGCAACGCTTcc > 8:51657/1‑149 (MQ=255) tACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCacaggaaca > 2:1995/1‑127 (MQ=255) tACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCacaggaaca < 1:1995/127‑1 (MQ=255) | GAAGCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCACGAAGTCGTGTTCGTCAGCCAGGGCAATCAGCTTCTTCAGGGTGTTCATCGGCACCAGCGCACCGGTAGGGTTGCCTGGCGAGCACAGGAACAGGATCTGGCAACGCTTCC > NC_002947/1780573‑1780850 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |