Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,845,792 | C→A | 8.5% | T28N (ACC→AAC) | pfeS‑II → | histidine kinase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,845,792 | 0 | C | A | 8.5% | 144.6 / 3.3 | 47 | T28N (ACC→AAC) | pfeS‑II | histidine kinase |
Reads supporting (aligned to +/- strand): ref base C (18/25); new base A (2/2); total (20/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.12e-01 |
AACGGCAGATCCGCACCGTGTGGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAGTGGGTGGCGGCCATGCATCAG > NC_002947/1845645‑1845937 | aaCGGCAGATCCGCACCGTGTGGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATAcc > 7:135328/1‑149 (MQ=255) aGATCCGCACCGTGTGGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCCCAGGTATAACTGAGGc < 1:24241/149‑1 (MQ=255) aGATCCGCACCGTGTGGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCCCAGGTATAACTGAGGc > 2:24241/1‑149 (MQ=255) aGATCCGCACCGTGGGGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGGGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCCCAGGTATAACTGAGGc < 7:85118/149‑1 (MQ=255) ccGTGTGGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATg < 2:260187/149‑1 (MQ=255) cGTGTGGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATg > 1:38203/1‑148 (MQ=255) tgGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAAc < 2:38203/149‑1 (MQ=255) ggCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCa < 5:142740/149‑1 (MQ=255) cAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAg > 8:40837/1‑148 (MQ=255) ggTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGc < 8:41321/149‑1 (MQ=255) gTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGcc < 6:151738/149‑1 (MQ=255) cGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTc < 7:40837/148‑1 (MQ=255) cGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTc < 1:43275/148‑1 (MQ=255) aGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGa < 5:330845/149‑1 (MQ=255) gTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACAt < 1:134752/121‑1 (MQ=255) gTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACAt > 2:134752/1‑121 (MQ=255) aGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCgg > 3:30923/1‑148 (MQ=255) gAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGAc > 7:152799/1‑149 (MQ=255) aaCCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGc > 3:127128/1‑149 (MQ=255) cATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGCTCGGCCTCAGGTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCggg < 8:306839/149‑1 (MQ=255) ccATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATgccgcc > 2:204573/1‑148 (MQ=255) cATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACGCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGa < 8:273961/149‑1 (MQ=255) ttCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAg > 5:336459/1‑149 (MQ=255) ttCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACa < 7:207384/149‑1 (MQ=255) cTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAgg > 5:313522/1‑149 (MQ=255) tGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGc > 2:208484/1‑149 (MQ=255) gAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGc < 6:336459/147‑1 (MQ=255) gAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGc < 3:96964/147‑1 (MQ=255) aGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTgg < 6:313522/149‑1 (MQ=255) tGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGgcg > 1:124363/1‑148 (MQ=255) gCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAg < 8:152799/149‑1 (MQ=255) gCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAg > 1:125806/1‑149 (MQ=255) gCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAg > 7:161049/1‑149 (MQ=255) ccATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGt < 1:208484/149‑1 (MQ=255) cTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCt < 4:285312/133‑1 (MQ=255) cTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCt > 3:285312/1‑133 (MQ=255) cctgcTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGAc < 4:30923/148‑1 (MQ=255) ctgATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAATCTGAACAGGCCTGGCGCAGTGGCGGGCAGGCAGGGCTGGACCAgt < 2:124363/148‑1 (MQ=255) tgatgaTCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTAt < 8:147851/92‑1 (MQ=255) tgatgaTCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTAt > 7:147851/1‑92 (MQ=255) tgccGGCCCCAGGTATAACTGAGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGTAGGGCTGGACCAgtgggtgg > 7:111610/4‑149 (MQ=255) gCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAGTGGGTGGCGGcc < 4:127128/149‑1 (MQ=255) cTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAGTGGGTGGCGGCCAt < 7:45341/149‑1 (MQ=255) tCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTCGCGCAGTGGCGGGCGGGCAGGGCTGGACCAGTGGGTGGCGGCCATg > 6:245970/1‑149 (MQ=255) aGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTGGGAGCCGGCACGCCAGAGCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGTGCTGGACCAGTGGGTGGCGGCCTTGc < 5:245970/148‑1 (MQ=255) ttATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTggc < 3:74441/109‑1 (MQ=255) ttATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTggc > 4:74441/1‑109 (MQ=255) ataCCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAGTGGGTGGCGGCCATGCATCAg > 4:119906/1‑149 (MQ=255) ccTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAgt > 7:19135/1‑126 (MQ=255) ccTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAgt < 8:19135/126‑1 (MQ=255) ccTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAGTGGGTggcgg < 1:167662/135‑1 (MQ=255) ccTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAGTGGGTggcgg > 2:167662/1‑135 (MQ=255) | AACGGCAGATCCGCACCGTGTGGGGCAAGGGTTACGTGCTCAGTGCCAGCGAGGCGGAGTGAACCATGCTCGACCGCCATTCGCTGTTCTGGAAGCTGGCCATCTTGCTGGTGGGCTTCTGCCTGCTGATGATCGGCCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCGAAGCTGAACAGGCCTGGCGCAGTGGCGGGCGGGCAGGGCTGGACCAGTGGGTGGCGGCCATGCATCAG > NC_002947/1845645‑1845937 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |