Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,944,530 | T→C | 6.4% | intergenic (+31/+231) | actP‑I → / ← PP_1744 | acetate permease/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,944,530 | 0 | T | C | 6.4% | 183.3 / 2.6 | 62 | intergenic (+31/+231) | actP‑I/PP_1744 | acetate permease/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (31/27); new base C (2/2); total (33/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 |
GGTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGTTTAATCA > NC_002947/1944394‑1944673 | ggTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCAGCTTGTCGTGGCGtt > 7:224782/1‑149 (MQ=255) gTCACCGACATGTGCAAGTCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGAGTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCATTCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGttt < 8:224782/149‑1 (MQ=255) tCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGACAAGCGGGGCGtttt < 5:312588/149‑1 (MQ=255) cGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTAt > 5:112761/1‑149 (MQ=255) cAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTc < 6:112761/149‑1 (MQ=255) tCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATg > 6:226535/1‑148 (MQ=255) cAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCAt > 8:84192/1‑145 (MQ=255) cAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCAt < 7:84192/145‑1 (MQ=255) aaGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGt > 3:312715/1‑149 (MQ=255) gcTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGa > 6:88107/1‑149 (MQ=255) tGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATg > 1:12893/1‑149 (MQ=255) aGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATg < 4:74220/147‑1 (MQ=255) gAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTc > 7:302262/1‑147 (MQ=255) gcgcgcTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGa > 2:239524/1‑147 (MQ=255) gcTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGtt < 5:226535/149‑1 (MQ=255) cTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTg < 1:239524/149‑1 (MQ=255) cTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTg < 4:312715/149‑1 (MQ=255) ttcttcCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTg < 2:287008/149‑1 (MQ=255) ttcttcCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTg < 5:88107/149‑1 (MQ=255) tcCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGa > 5:172106/1‑135 (MQ=255) tcCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGa < 6:172106/135‑1 (MQ=255) gCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGctct > 5:178642/1‑145 (MQ=255) gCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGctct < 6:178642/145‑1 (MQ=255) gTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATg > 7:249688/1‑115 (MQ=255) gTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATg < 8:249688/115‑1 (MQ=255) cGCAGACTGGCCTGGGGGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCAt < 8:277591/148‑1 (MQ=255) tGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAg > 6:304590/1‑149 (MQ=255) ccAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATgg > 5:109677/1‑149 (MQ=255) aGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCa < 8:73096/78‑1 (MQ=255) aGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCa > 7:73096/1‑78 (MQ=255) aGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATggag > 7:224728/1‑149 (MQ=255) ggCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACgg > 4:183870/1‑149 (MQ=255) ggTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGACGACGGca > 6:211091/1‑148 (MQ=255) gCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTgg > 5:222937/1‑149 (MQ=255) aCTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGc < 8:72246/74‑1 (MQ=255) aCTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGc > 7:72246/1‑74 (MQ=255) tAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGt < 4:257004/115‑1 (MQ=255) tAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGt > 3:257004/1‑115 (MQ=255) aCATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATg < 7:83255/126‑1 (MQ=255) aCATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATg > 8:83255/1‑126 (MQ=255) aCATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTg > 5:337028/1‑149 (MQ=255) aTCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGt > 4:75546/1‑149 (MQ=255) tCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGt > 6:69626/1‑148 (MQ=255) tCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTc < 6:109677/149‑1 (MQ=255) aaTCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCCCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCaa > 8:292462/1‑149 (MQ=255) aTCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAAt < 3:183870/149‑1 (MQ=255) aTCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAAt > 1:44738/1‑149 (MQ=255) tCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAAt > 8:35224/1‑148 (MQ=255) cccTGCATTGAAAACGCCCGGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGaa < 5:304590/149‑1 (MQ=255) cccTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGaa < 5:126978/149‑1 (MQ=255) cTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGc > 1:275944/1‑149 (MQ=255) cATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCCCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCa < 7:292462/148‑1 (MQ=255) ataaaaaaCGCCCCGACAAGCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAAt > 7:169820/5‑140 (MQ=255) ataaaaaaCGCCCCGACAAGCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAAt < 8:169820/136‑1 (MQ=255) aaaaCGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGt < 5:69626/149‑1 (MQ=255) aaaaCGCCCCGACAAGCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGt > 2:189944/1‑149 (MQ=255) aaaCGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGtt < 7:35224/149‑1 (MQ=255) aaaCGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGtt < 3:75546/149‑1 (MQ=255) aaaCGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGt < 2:275944/148‑1 (MQ=255) gCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGTTTAAt < 6:222937/149‑1 (MQ=255) cccGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGTTTAATCa > 1:133576/1‑149 (MQ=255) cccGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGTTTAATCa > 8:231259/1‑149 (MQ=255) | GGTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATTGAAAACGCCCCGCTTGTCGGGGCGTTTTTTATTTCATGCAGTCGGCGATGGCCTCCAGACAGGTTGGTGCTCTGCCCATGCTCCCCTCATGTCGTGAGCGCCTTCATGGAGGACGGCACATTTGGGGGCTGGTCAATGAAGCCATACTGTTTAATCA > NC_002947/1944394‑1944673 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |