Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,104,697 | A→G | 12.7% | F63L (TTC→CTC) | PP_1879 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,104,697 | 0 | A | G | 12.7% | 133.4 / 10.8 | 55 | F63L (TTC→CTC) | PP_1879 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (25/23); new base G (5/2); total (30/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.36e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.26e-01 |
AATAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGTTACCGGA > NC_002947/2104551‑2104841 | aaTAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACt < 5:269675/149‑1 (MQ=255) aaTAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGGCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAAc < 6:198872/148‑1 (MQ=255) aGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCAc > 5:100264/1‑149 (MQ=255) ggTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAgggggg > 1:18188/1‑148 (MQ=255) gTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGaa > 2:13845/1‑149 (MQ=255) ccAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAg < 1:13845/149‑1 (MQ=255) ccAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAg < 2:229276/149‑1 (MQ=255) atatGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAGTTCCACCCgt > 6:188480/1‑133 (MQ=255) atatGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAGTTCCACCCgt < 5:188480/134‑2 (MQ=255) ctctTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACt > 1:248202/1‑149 (MQ=255) ttCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGa > 2:248517/1‑149 (MQ=255) cAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGa < 1:317628/147‑1 (MQ=255) gATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTgg < 1:248517/149‑1 (MQ=255) gAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGCGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCt > 7:260861/1‑148 (MQ=255) tcttGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCATGTTGGGTTTCCCCCCTTCAACATCg > 6:58813/1‑149 (MQ=255) cttGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCg < 6:100264/148‑1 (MQ=255) tGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTc > 5:139686/1‑148 (MQ=255) tCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAGTTCCACCCgtg > 2:235319/1‑86 (MQ=255) tCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCAACTATTTCCGGGTGCGAATTTGCCCACGGGTGGAGTTCCACCCgtg < 1:235319/88‑3 (MQ=255) aCCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCcaccac < 2:18188/149‑1 (MQ=255) aGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTgg > 3:208248/1‑118 (MQ=255) aGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTgg < 4:208248/118‑1 (MQ=255) gTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCtt < 2:248202/149‑1 (MQ=255) gTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCtt < 2:296729/149‑1 (MQ=255) tACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTcc > 2:241712/1‑139 (MQ=255) tACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTcc < 1:241712/139‑1 (MQ=255) aTTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACgg > 1:241624/1‑149 (MQ=255) cAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTgg < 2:241624/149‑1 (MQ=255) gTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCATGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTgggg < 5:58813/149‑1 (MQ=255) aaaGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTggggg > 5:316703/1‑142 (MQ=255) aaaGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTggggg < 6:316703/142‑1 (MQ=255) aaGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACaa > 7:55693/1‑146 (MQ=255) ccTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTcc > 1:279632/1‑93 (MQ=255) ccTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTcc < 2:279632/93‑1 (MQ=255) cTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGt > 3:216588/1‑149 (MQ=255) tCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTc > 8:69490/1‑149 (MQ=255) cTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGt > 4:199973/1‑149 (MQ=255) tttCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGtt > 2:238609/1‑147 (MQ=255) tttCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCa < 8:260861/149‑1 (MQ=255) gggTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCCTCAACATCGTCCACCACGCTTGGTAGGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTGAGGGGt > 8:65307/1‑149 (MQ=255) ggTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGtt < 1:179025/149‑1 (MQ=255) gAATTTTCCCACGGGGGGAACTCCACCCGGAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAggg < 2:154029/141‑1 (MQ=255) gAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGGTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGtgatcg > 1:154029/1‑143 (MQ=255) gAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTg > 4:302113/1‑145 (MQ=255) gAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTg < 3:302113/145‑1 (MQ=255) ccctgcGGGTGGAGTTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCg > 3:45669/6‑149 (MQ=255) ctgcGGGTGGAGTTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCCCGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGTGTTCTGCGGt > 6:243863/4‑149 (MQ=255) ccACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTg > 6:155907/1‑145 (MQ=255) ccACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTg < 5:155907/145‑1 (MQ=255) ccACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGt > 7:36885/1‑149 (MQ=255) tgcGGGTGGAGTTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGt > 8:260266/3‑148 (MQ=255) cACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGt > 8:133837/1‑148 (MQ=255) gTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAagagag < 4:312104/109‑1 (MQ=255) gTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAagagag > 3:312104/1‑109 (MQ=255) tGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGTTACCGGa < 6:139686/149‑1 (MQ=255) | AATAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGTTACCGGA > NC_002947/2104551‑2104841 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |