Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,213,229 | G→C | 8.1% | G19R (GGA→CGA) ‡ | PP_1956 → | hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,213,229 | 0 | G | C | 8.1% | 192.0 / 6.0 | 62 | G19R (GGA→CGA) ‡ | PP_1956 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (25/32); new base C (2/3); total (27/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.10e-01 |
TCTTTGCAAGTAATCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCTTGGATTTCCTACCTACTGGACAGAGGAC > NC_002947/2213084‑2213375 | tctTTGCAAGTAATCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATTTGGTTTTTgg < 5:76337/147‑1 (MQ=255) tttGCAAGTAATCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAAt < 4:238057/149‑1 (MQ=255) tGCAAGTAATCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGaaa < 5:119120/146‑1 (MQ=255) cAAGTAATCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATAcc < 5:330765/148‑1 (MQ=255) gTAATCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACAACAt > 6:279209/1‑149 (MQ=255) aaTCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACAtt < 2:55242/148‑1 (MQ=255) aTCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTtg < 4:238291/149‑1 (MQ=255) tCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTATTTCCAAAAACCACAtgc < 1:227193/147‑3 (MQ=255) tCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTATTTCCAAAAACCACAtgc > 2:227193/1‑145 (MQ=255) ggTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTtgctgc > 6:139252/1‑149 (MQ=255) gTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGcc > 3:261929/1‑149 (MQ=255) gTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGcc > 4:128468/1‑149 (MQ=255) gTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTATTTCCAAAAACCACAtgcag < 5:208999/145‑5 (MQ=255) gTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTATTTCCAAAAACCACAtgcag < 7:272388/145‑5 (MQ=255) aaaCCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGaaa < 5:139252/149‑1 (MQ=255) aaCCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGaaaa < 6:128929/149‑1 (MQ=255) aCCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGaaaa > 6:328907/1‑148 (MQ=255) cGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAatat < 7:43992/149‑1 (MQ=255) gAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCa < 1:199518/149‑1 (MQ=255) accAACCGCCTCCAAAAATAAAAAATTCCTGCCTCAAAAGGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCaa < 1:111099/147‑1 (MQ=255) aCCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAagcca > 8:106317/1‑149 (MQ=255) tCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGc > 6:207735/1‑149 (MQ=255) cAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGccc < 4:261929/149‑1 (MQ=255) aataatAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGccc > 1:215907/1‑148 (MQ=255) taaCAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTgg > 7:93297/1‑149 (MQ=255) aCAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTggcg < 5:207735/149‑1 (MQ=255) cAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAAtt > 5:113089/1‑144 (MQ=255) cAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAAtt < 6:113089/144‑1 (MQ=255) aaTATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTggcgg > 1:245427/1‑148 (MQ=255) tatGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCAc < 3:128468/149‑1 (MQ=255) ccGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGata < 6:327092/147‑1 (MQ=255) ccGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATAtt > 6:154838/1‑149 (MQ=255) cGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTc < 6:115353/149‑1 (MQ=255) cATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGAc < 5:301074/149‑1 (MQ=255) aTTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACa < 5:154838/149‑1 (MQ=255) cgaagcgaaTGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGa < 8:93297/149‑1 (MQ=255) gaagcgaaTGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTgg > 8:262570/1‑125 (MQ=255) gaagcgaaTGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTgg < 7:262570/125‑1 (MQ=255) tGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCt > 6:175207/1‑141 (MQ=255) tGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCt < 5:175207/141‑1 (MQ=255) tGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTccac > 4:71176/1‑149 (MQ=255) tttATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGTGGCACTGATATTCGATAAGCGATTCTACCTCCACCAGgtgt > 6:189654/1‑149 (MQ=255) ataataAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATgg < 5:328907/148‑1 (MQ=255) taaGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTgg > 4:278829/1‑149 (MQ=255) cgcacgcTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTg < 2:215907/149‑1 (MQ=255) cTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAg < 7:106317/149‑1 (MQ=255) tATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTgg < 8:216600/136‑1 (MQ=255) tATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTgg > 7:216600/1‑136 (MQ=255) tcGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCtt > 6:309300/1‑149 (MQ=255) gcgGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCTTg > 7:201926/1‑148 (MQ=255) aTTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTggc < 8:146140/72‑1 (MQ=255) aTTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTggc > 7:146140/1‑72 (MQ=255) ttGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGTGGCACTGATATTCGATAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCTTGGATTTcct < 5:189654/149‑1 (MQ=255) cagcaaaTGTGGTATTTCCAAAAACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCTTGGATTTcctacc > 7:180202/7‑149 (MQ=255) ccTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCTTGGATTTcctacc > 1:81674/1‑148 (MQ=255) gCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGc < 6:114772/84‑1 (MQ=255) gCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGc > 5:114772/1‑84 (MQ=255) gCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGc < 6:327446/84‑1 (MQ=255) gCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGc > 5:327446/1‑84 (MQ=255) cATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCTTGGATTTCctacctac < 5:279209/147‑1 (MQ=255) aTGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGTCCCAATTGCCGGCACTGATCTTCGACAAGCGATTCTACCTCCACCAGTTGATTATGGCCTGGGCGTTGTTGTAGGGCTTGGATTTCCTACCTACTg < 8:97069/148‑1 (MQ=255) tttttGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCTTGGATTTCCTACCTACTGGACagag < 3:71176/149‑1 (MQ=255) ttGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGAGGAGACCTCCACCAGGAGTTATTTGAATGGGCGTTGGTGTAGGGCTTGGATTTACTACCTACTGGACAGCGGAc > 1:271652/1‑149 (MQ=255) | TCTTTGCAAGTAATCTGGTAAAAACCGGAGCAACCGGCTCCAATAATAACAATATGCTGCCGACATTCGCGAAGCGAATGGTGAGGTTTTTATGAATAATAAGTACGCACGCTATCTCGCGGTAATTGCCCTGCATGTGGTTTTTGGAAATACCACATTTGCTGCCGAAAATATCAAGCCAGCCGGCCCAATTGGCGGCACTGATATTCGACAAGCGATTCTACCTCCACCAGGTGTTTATGGCCTGGGCGTTGGTGTAGGGCTTGGATTTCCTACCTACTGGACAGAGGAC > NC_002947/2213084‑2213375 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |