| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,301,776 | G→C | 5.4% | L30L (CTG→CTC) ‡ | PP_5497 → | rhs repeat‑associated core domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,301,776 | 0 | G | C | 5.4% | 405.7 / 10.1 | 129 | L30L (CTG→CTC) ‡ | PP_5497 | rhs repeat‑associated core domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (59/61); new base C (4/3); total (64/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.94e-01 | |||||||||||
Only 100 of 129 total aligned reads displayed.
GGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGTTAA > NC_002947/2301633‑2301922 | ggAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgt > 1:131974/1‑149 (MQ=255)ggAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgt < 6:60231/149‑1 (MQ=255)ggAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgt > 2:39905/1‑149 (MQ=255) gAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgtt < 7:252404/149‑1 (MQ=255) aaaaTTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgttga < 4:307101/149‑1 (MQ=255) aaaaTTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgttga < 1:39905/149‑1 (MQ=255) aaTTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgttgagt < 4:67088/149‑1 (MQ=255) aaTTGTGTTCGAGCAAACTACAACTGGATCACTTGTATGAGGCTAGGCGATGGCTACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCCAGCCGTTCGCCgttgaaa < 7:108562/149‑3 (MQ=255) aTTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCCAGCCGTTCGCCgttgaaac < 7:282/149‑4 (MQ=255) tgtTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGAc < 6:195078/148‑1 (MQ=255) tgtTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGAc < 7:92985/148‑1 (MQ=255) gtTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGAc > 5:198970/1‑147 (MQ=255) ttCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCCTCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGa < 4:181864/148‑1 (MQ=255) gAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgttgag > 1:177688/1‑138 (MQ=255) gAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgttgag < 2:177688/138‑1 (MQ=255) cAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTAcc > 1:35580/1‑148 (MQ=255) aCTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTAtt < 5:18744/149‑1 (MQ=255) cTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTg < 6:286014/149‑1 (MQ=255) tacatCACTTGTATGAGGCTAACCGAAGACGACATAGGCACAGGACTATACAGCATACGCGTACTCAAAGCGGCCATCGAAAAGCACGCTACACGGTTTC‑AACGACTAACCGCTGGCCGTTCAGTAGACGAGATACCTATAGGCCAACg > 4:282279/5‑149 (MQ=255) tGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGCTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACg > 5:224886/1‑149 (MQ=255) gCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACggg > 2:262249/1‑149 (MQ=255) gCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACg < 3:107285/147‑1 (MQ=255) tCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTa > 2:292176/1‑149 (MQ=255) tCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTa > 6:289993/1‑149 (MQ=255) aCTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTgg > 7:96880/1‑137 (MQ=255) aCTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATc < 5:289993/149‑1 (MQ=255) ttGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCACCGGTTATCGt > 8:265854/1‑149 (MQ=255) ttGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATc > 2:180306/1‑147 (MQ=255) ttGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGt < 6:198970/149‑1 (MQ=255) ttGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGt < 7:76919/149‑1 (MQ=255) ttGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGt < 5:224528/149‑1 (MQ=255) gAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCAtt > 3:191617/1‑148 (MQ=255) gAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCAtt > 5:34659/1‑148 (MQ=255) ggCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCCAGCCgttcgccg < 2:112686/110‑6 (MQ=255) ggCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCCAGCCgttcgccg > 1:112686/1‑105 (MQ=255) tAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGc > 7:239341/1‑147 (MQ=255) ggCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAAc > 3:147496/1‑127 (MQ=255) ggCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAAc < 4:147496/127‑1 (MQ=255) gATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGctc < 6:178158/149‑1 (MQ=255) aTGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgttga < 1:281540/98‑1 (MQ=255) aTGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCgttga > 2:281540/1‑98 (MQ=255) cGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCAtt > 7:287968/1‑133 (MQ=255) cGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCAtt < 8:287968/133‑1 (MQ=255) gACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATgc > 8:218986/1‑149 (MQ=255) ttGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCtt > 3:99452/1‑149 (MQ=255) ggCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCttt < 6:34659/148‑1 (MQ=255) acaGGACTAAACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGATTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACAGGTAAAGTCCATTCAGCCCGGATCTGATGCGCtaacact > 4:220399/1‑143 (MQ=255) caGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTc < 4:99452/149‑1 (MQ=255) gTCTATACAGCATACTGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACTGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTcggc < 7:265854/149‑1 (MQ=255) gTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGAt > 4:5420/1‑134 (MQ=255) gTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGAt < 3:5420/134‑1 (MQ=255) tCTTTACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTcggc < 3:282279/148‑1 (MQ=255) taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑ATCGGCGAACGTCTGGCCGTTGAGTTGACGAGTTACCTATTGGTCAACGGGTATCTTTCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGAc < 3:220399/148‑1 (MQ=255) taCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGa > 1:39373/1‑147 (MQ=255) aCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATgcgc < 6:51938/132‑1 (MQ=255) aCAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATgcgc > 5:51938/1‑132 (MQ=255) aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCt > 7:285400/1‑149 (MQ=255) aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCt < 2:39373/149‑1 (MQ=255) aGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCt > 8:268154/1‑149 (MQ=255) aTACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCa < 7:130064/149‑1 (MQ=255) aCGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTCGAACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATCCGCTTTCTGTCGGCGGACACCTTCaa > 1:234706/1‑148 (MQ=255) aCGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTc < 2:234706/146‑1 (MQ=255) gggTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGccc > 4:8290/1‑149 (MQ=255) ggTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCg > 2:296539/1‑149 (MQ=255) cTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGttt < 1:296539/148‑1 (MQ=255) tCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTgg > 5:241457/1‑149 (MQ=255) tCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTgg > 8:22885/1‑149 (MQ=255) ccAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGt < 8:239341/149‑1 (MQ=255) aaGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGt > 3:318211/1‑147 (MQ=255) aGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAg < 6:159722/149‑1 (MQ=255) gCGGCCATCGAAAAGCACGCTACTCGGCTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAgg < 6:224886/149‑1 (MQ=255) gCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAgggtg < 3:235238/149‑1 (MQ=255) ccATCGAAAAGCACCCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAAAGGGTATCGTGCATTCAGCCCGGCTCTGAAGCGCTTTCTGTCGGCGGACAGCTACAGCCCGTTTGGTGAggctgg > 1:223950/1‑149 (MQ=255) cATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGc < 1:240624/92‑1 (MQ=255) cATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGc > 2:240624/1‑92 (MQ=255) cATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAgggtggg > 6:74125/1‑149 (MQ=255) tCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGa > 2:319089/1‑140 (MQ=255) gAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTgg < 3:63584/135‑1 (MQ=255) gAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTgg > 4:63584/1‑135 (MQ=255) cGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTAc < 7:243299/149‑1 (MQ=255) cTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCtt < 6:241457/149‑1 (MQ=255) tCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCttt > 4:107417/1‑149 (MQ=255) caactC‑AACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTg > 6:132539/5‑149 (MQ=255) tttC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTcggc > 4:195955/1‑96 (MQ=255) tttC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCtttt < 5:304164/146‑1 (MQ=255) tttC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCtttt > 6:304164/1‑146 (MQ=255) tttC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGtt < 1:276088/149‑1 (MQ=255) ctC‑AACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTc > 7:86593/2‑149 (MQ=255) tC‑AACGGCCAGCCGTTCGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTc > 3:14725/1‑148 (MQ=255) aaCGGCGAACGTCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTTCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGaa < 2:168865/149‑1 (MQ=255) aaCGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGtt > 6:26816/1‑110 (MQ=255) aaCGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGtt < 5:26816/110‑1 (MQ=255) aaCGGCGAACGACTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGaa < 6:259971/149‑1 (MQ=255) ggCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGa > 7:169469/1‑149 (MQ=255) cGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAg > 5:264508/1‑126 (MQ=255) cGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAg < 6:264508/126‑1 (MQ=255) gAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGtt < 2:44714/104‑1 (MQ=255) cGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGt > 1:15950/1‑149 (MQ=255) cGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGt < 1:292176/149‑1 (MQ=255) tGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAATAGCTACGCCTTTTGTTCGAATGATCCTGTTaa > 4:241141/1‑148 (MQ=255) | GGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCCAAGCGGCCATCGAAAAGCACGCTACTCGGTTTC‑AACGGCGAACGGCTGGCCGTTGAGTTGACGAGTTACCTATTGGGCAACGGGTATCGTGCATTCAGCCCGGCTCTGATGCGCTTTCTGTCGGCGGACAGCTTCAGCCCGTTTGGTGAGGGTGGGGTGAACAGCTACGCCTTTTGTTCGAATGATCCTGTTAA > NC_002947/2301633‑2301922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |