| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,320,806 | C→A | 5.5% | V145V (GTG→GTT) | PP_2041 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,320,806 | 0 | C | A | 5.5% | 323.7 / 5.2 | 101 | V145V (GTG→GTT) | PP_2041 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (51/44); new base A (4/2); total (55/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
GCATTACCAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAGGCAGTGGCGG > NC_002947/2320664‑2320948 | gCATTACCAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGcc > 3:6022/1‑148 (MQ=255)gCATTACCAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGcc > 5:331041/1‑148 (MQ=255) aTTACCAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGa > 5:190488/1‑148 (MQ=255) cAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCa > 7:165745/1‑149 (MQ=255) aGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCAc < 7:285730/149‑1 (MQ=255) ggcTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTg < 1:165418/149‑1 (MQ=255) ggcTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTg > 5:214342/1‑149 (MQ=255) gCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAg > 8:258790/1‑149 (MQ=255) gCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAg > 7:214763/1‑149 (MQ=255) cGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTc < 8:304158/148‑1 (MQ=255) cGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTc > 4:293464/1‑148 (MQ=255) aGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCt > 8:277808/1‑149 (MQ=255) gCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCt > 8:277229/1‑148 (MQ=255) gCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTg < 3:293464/149‑1 (MQ=255) cAAGGTGATGGGCGACTCTTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGTGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGc < 7:162385/149‑1 (MQ=255) cAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGc < 8:165745/149‑1 (MQ=255) cAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGc > 7:241240/1‑149 (MQ=255) aaGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGcc < 7:11840/149‑1 (MQ=255) gATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTGGTGTCCAACGCCGaagaac > 2:325138/1‑114 (MQ=255) gATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTGGTGTCCAACGCCGaagaac < 1:325138/118‑5 (MQ=255) gggCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTcgc > 2:143719/1‑149 (MQ=255) ggCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTcgcg < 5:213241/149‑1 (MQ=255) gCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCgg > 4:126437/1‑149 (MQ=255) aCTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTc < 8:241240/149‑1 (MQ=255) cTCGTCAGGGCCGTGCCCCGGCAGGCCGACCCAATACAGGTCGTCGGAAAACACGGGCTCGGCGACCACCTGGAC‑‑A‑AGTTCTTAGGCGTTGGGCACCACGCCGAAATCCCCCTTGCCCCGCTCGATCGCCTGGCCACCTTCGCGGCt > 3:214285/1‑147 (MQ=255) gTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAgg < 7:14000/148‑1 (MQ=255) gTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGc > 5:259407/1‑149 (MQ=255) gTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGc < 6:214342/149‑1 (MQ=255) tCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGc > 1:140004/1‑148 (MQ=255) gggCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCAc < 2:156643/130‑1 (MQ=255) gggCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCAc > 1:156643/1‑130 (MQ=255) ggCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGACTGG‑AGTTCTTCGGCGTTGGGCACAACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCAt > 1:102687/1‑149 (MQ=255) ccGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTg > 6:185821/1‑122 (MQ=255) ccGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTg < 5:185821/122‑1 (MQ=255) ccGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATccc > 2:85868/1‑148 (MQ=255) gTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCaaa < 1:85868/149‑1 (MQ=255) tGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑AGAGTTATTAGGCGTTTGGCAACAAGCCGAAATCCACCTTTCCCAGCTCGATAGCCTGGCCACCTTCGCGGCTCAGGCCATACCaa > 1:259882/1‑148 (MQ=255) ccAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGt < 2:140004/149‑1 (MQ=255) aggcaggcCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGa < 7:258790/149‑1 (MQ=255) gcCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGa > 4:53952/1‑149 (MQ=255) cGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATc > 6:68099/1‑149 (MQ=255) gACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATcc > 4:56165/1‑149 (MQ=255) cccAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCCCCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATACCAAACGGTGAGCTTGATcccc > 4:3376/1‑149 (MQ=255) ccAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCg > 3:84701/1‑149 (MQ=255) cAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCgg < 7:45169/149‑1 (MQ=255) cAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCgg > 2:219074/1‑149 (MQ=255) aaTACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCCCGCCGAAATCCCCCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCgg > 4:298499/1‑148 (MQ=255) aaTACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCggg < 3:126437/149‑1 (MQ=255) cAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGc < 8:214763/149‑1 (MQ=255) aGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGc < 7:38340/97‑1 (MQ=255) aGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGc > 8:38340/1‑97 (MQ=255) aGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCg > 3:60936/1‑149 (MQ=255) gTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGATTGATCCCCGGGAAGCGTg > 6:71573/1‑149 (MQ=255) gTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCACAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTg > 5:285122/1‑149 (MQ=255) ggAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctggg > 5:193903/1‑149 (MQ=255) ggAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgg < 6:259407/148‑1 (MQ=255) gAATACACGGGCTCGGCGACCACTTGGAC‑‑A‑AGGTGTTAGGCGGTGGGCAGCACGGCGAAATCCACCTTGCCCAGCTCTATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACTGTGAGCTTGATCCCCGGGaa < 8:232038/137‑1 (MQ=255) gAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGaa > 7:232038/1‑137 (MQ=255) gAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggc > 2:220029/1‑149 (MQ=255) aaaCACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggcct > 7:164507/1‑149 (MQ=255) aaaCACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggcct > 6:62405/1‑149 (MQ=255) acccGGGCTCGGCTCCACCCTGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGCTCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggccggg < 4:214285/146‑1 (MQ=255) acacGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggtctgg < 6:331041/149‑1 (MQ=255) acacGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggcctgg < 5:68099/149‑1 (MQ=255) acacGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggcctgg < 8:108835/149‑1 (MQ=255) acacGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggcctgg < 4:6022/149‑1 (MQ=255) acacGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggcctgg < 6:285122/149‑1 (MQ=255) cccGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGcctgggcctggg < 5:287350/147‑1 (MQ=255) gggCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTaa > 5:250391/1‑149 (MQ=255) gggCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTaa < 3:53952/149‑1 (MQ=255) gggCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTaa > 2:308562/1‑149 (MQ=255) gCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggc < 1:205150/139‑1 (MQ=255) gCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTgcctgggc > 2:205150/1‑139 (MQ=255) ggCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAatgat < 4:60936/147‑1 (MQ=255) gCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGc > 3:37017/1‑149 (MQ=255) gACCACATGGCC‑‑C‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAACCGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCg < 3:64165/149‑1 (MQ=255) cacaTTGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTTGCAACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGca < 2:259882/149‑1 (MQ=255) cacaTGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGca < 4:84701/149‑1 (MQ=255) caTGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGcaac < 7:277808/149‑1 (MQ=255) caTGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGcaa > 3:76805/1‑148 (MQ=255) aTGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGcaac > 5:152538/1‑148 (MQ=255) gAC‑‑C‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAacaaca < 6:190488/149‑1 (MQ=255) gAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGcaacaa > 7:79229/1‑147 (MQ=255) aC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGAGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAAGAACAg > 1:239939/1‑149 (MQ=255) gTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGcc > 4:108631/1‑149 (MQ=255) gTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGcc > 6:287925/1‑149 (MQ=255) ttcttcGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGcc > 8:31210/1‑148 (MQ=255) ttcttcGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCg > 1:56210/1‑149 (MQ=255) ttcttcGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCg < 2:102687/149‑1 (MQ=255) tttcGGCGTGGTGCCCAACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAg > 3:244996/2‑149 (MQ=255) cttcGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAg > 4:124939/1‑149 (MQ=255) ttcGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAgg > 5:330382/1‑149 (MQ=255) tcGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAgg > 3:235454/1‑148 (MQ=255) tcGGCGTGGTGCCCAACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGc < 2:149178/143‑1 (MQ=255) tcGGCGTGGTGCCCAACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGc > 1:149178/1‑143 (MQ=255) gTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAGGCAGTgg < 6:193903/149‑1 (MQ=255) ttGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAGGCAGTGGc < 5:71573/149‑1 (MQ=255) ttGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAGGCAGTGGc < 2:56210/149‑1 (MQ=255) ttGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAGGCAGTGGc < 1:143719/149‑1 (MQ=255) ggCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAGGCAGTGGCgg < 6:330382/148‑1 (MQ=255) | GCATTACCAGGCGGCTCGCTGCGGCTTCAGCCAAGGTGATGGGCGACTCGTCAGGGCCGTGCCCAGGCAGGCCGACCCAATACAGGTCTTCGGAAAACACGGGCTCGGCGACCACATGGAC‑‑A‑AGTTCTTCGGCGTTGGGCACCACGCCGAAATCCACCTTGCCCAGCTCGATCGCCTGGCCACCTTCGCGGCTCAGGCCATCCCAAACGGTGAGCTTGATCCCCGGGAAGCGTGCCTGGGCCTGGGTAATGATGGCCGGCAACAACAGTGCCGAGGCAGTGGCGG > NC_002947/2320664‑2320948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |