| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,356,425 | G→T | 5.1% | L133M (CTG→ATG) | PP_2070 ← | AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,356,425 | 0 | G | T | 5.1% | 400.3 / 7.8 | 122 | L133M (CTG→ATG) | PP_2070 | AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (64/50); new base T (4/2); total (68/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.21e-01 | |||||||||||
Only 100 of 122 total aligned reads displayed.
CGCCATTGGCCATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTCGCGCAGCAGGCCGGACAC > NC_002947/2356283‑2356572 | cgcCATTGGCCATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCACgcctgc < 5:274421/149‑1 (MQ=255) gcCATTGGCCATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGgcgtgcg < 8:32669/149‑1 (MQ=255) gcCATTGGCCATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGgcgtgcg > 5:137924/1‑149 (MQ=255) cATTGGCCATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCCTGcgtgcctg < 6:245330/149‑1 (MQ=255) cATTGGCCATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGcgtgcgtg > 5:335768/1‑149 (MQ=255) gCCATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGtgctgc < 2:212626/148‑1 (MQ=255) ccATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCACGCctgcgtgcctggt < 2:30891/149‑6 (MQ=255) aTACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCAGCACGC‑ACGCCTGCGTGCCTGGTgcgagc < 8:63313/149‑4 (MQ=255) aTACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCAGCACGC‑ACGCCTGCGTGCCTGGTgcgagc > 7:63313/1‑146 (MQ=255) aCATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCggg < 5:112040/149‑1 (MQ=255) cccACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGaa < 8:754/149‑1 (MQ=255) cccACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCACATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGa < 8:127049/148‑1 (MQ=255) gcgcTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGTGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATc < 6:124402/147‑1 (MQ=255) gcTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATg > 1:162126/1‑149 (MQ=255) gAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGcc > 3:110033/1‑149 (MQ=255) aCAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGAc < 1:166685/130‑1 (MQ=255) aCAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGAc > 2:166685/1‑130 (MQ=255) aGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCa < 8:18363/135‑1 (MQ=255) aGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCa > 7:18363/1‑135 (MQ=255) gCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcg > 5:75604/1‑149 (MQ=255) ccTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcgg > 8:68810/1‑149 (MQ=255) ccTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcgg > 3:44237/1‑149 (MQ=255) cTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcggc > 2:91014/1‑149 (MQ=255) gCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTTCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcggcg < 6:17953/147‑1 (MQ=255) gCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGGCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcggcg < 5:47735/147‑1 (MQ=255) ccACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcggcggc > 3:201551/1‑148 (MQ=255) acTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑tt > 4:299259/1‑149 (MQ=255) ggCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACa < 2:271759/149‑1 (MQ=255) ggCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACa < 6:75604/149‑1 (MQ=255) gCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAg > 8:7239/1‑140 (MQ=255) gCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAg < 7:7239/140‑1 (MQ=255) gCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAg > 7:180536/1‑149 (MQ=255) aCTCATGTTCAGTTGTGCTCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGa < 4:300271/137‑1 (MQ=255) aCTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGa > 3:300271/1‑137 (MQ=255) aCTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGa > 6:55676/1‑149 (MQ=255) aCTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGa < 3:159521/149‑1 (MQ=255) aTGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCa < 6:335768/148‑1 (MQ=255) aTGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCa < 6:137924/148‑1 (MQ=255) aTGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAg > 5:275311/1‑149 (MQ=255) tGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcggcggc > 7:28066/1‑130 (MQ=255) tGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGggcggcggc < 8:28066/130‑1 (MQ=255) gTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGAt > 6:221497/1‑114 (MQ=255) gTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGAt < 5:221497/114‑1 (MQ=255) gTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAgcg > 2:146163/1‑149 (MQ=255) ttCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAgcgc > 1:300961/1‑149 (MQ=255) ttCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAgcgc > 3:23757/1‑149 (MQ=255) gTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGccc > 6:286414/1‑147 (MQ=255) gTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGa < 2:162126/149‑1 (MQ=255) gTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGa < 7:88116/149‑1 (MQ=255) gtgCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGc < 5:247422/148‑1 (MQ=255) cgccgcATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATgc > 6:25117/1‑149 (MQ=255) gccgcATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGa < 7:93834/119‑1 (MQ=255) ccgcATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATgcgc < 1:146163/149‑1 (MQ=255) ccgcATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATgcgc < 6:72106/149‑1 (MQ=255) cgcATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATgcgcg < 8:180536/149‑1 (MQ=255) cTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTcgc < 3:45895/149‑1 (MQ=255) tCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTcgcg > 5:7809/1‑149 (MQ=255) tCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTcgcg > 4:137269/1‑149 (MQ=255) ccAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATc < 2:154083/122‑1 (MQ=255) ccAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATc > 1:154083/1‑122 (MQ=255) tCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTc < 5:25117/149‑1 (MQ=255) cAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCa < 2:196753/149‑1 (MQ=255) cAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCa < 3:251827/149‑1 (MQ=255) aGGTCCTGGGCCGGGTCCTGCAGGAAGGGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCa < 5:3250/148‑1 (MQ=255) aGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAg > 6:243676/1‑149 (MQ=255) aGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAg > 7:30653/1‑149 (MQ=255) aGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAg < 6:7809/149‑1 (MQ=255) tCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCAc > 6:256790/1‑149 (MQ=255) tGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCg > 4:247290/1‑149 (MQ=255) gggCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGt > 3:202124/1‑149 (MQ=255) gCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGa > 3:35925/1‑149 (MQ=255) gCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGa < 7:135985/149‑1 (MQ=255) ccGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAGTTTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGa < 1:91014/149‑1 (MQ=255) tCCTGCAGGAAGCGCTCGCACCAGGCGACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGAcgccg > 1:3436/1‑149 (MQ=255) gCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTc < 2:219434/128‑1 (MQ=255) cAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGa < 4:284874/149‑1 (MQ=255) cAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGa > 4:229198/1‑149 (MQ=255) gAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGAt > 4:261428/1‑147 (MQ=255) gAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCa < 4:202124/149‑1 (MQ=255) cgacgccGCAGCACGC‑ACGCCTGCGTGCCTGGTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGt > 8:268294/7‑149 (MQ=38) aGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGt > 1:4849/1‑149 (MQ=255) gcTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTcg > 5:230204/1‑149 (MQ=255) cTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTcgc < 1:181079/149‑1 (MQ=255) cTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTcgc < 3:247290/149‑1 (MQ=255) tCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTcgcg > 6:238418/1‑149 (MQ=255) tCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTcgcg > 6:273878/1‑149 (MQ=255) ccGCAGCACGC‑ACGCCTGCGTGCCTGGTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTcgcg > 1:25474/2‑149 (MQ=255) gCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTcgcg > 7:33327/1‑147 (MQ=255) agcacgC‑ACGCCTGCGTGCCTGATGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGAcgccgc > 7:50701/6‑130 (MQ=255) aCCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCAt > 8:130230/1‑93 (MQ=255) aCCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCAt < 7:130230/93‑1 (MQ=255) cAGGC‑ACGCAGGTGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTCGCGcagcag > 4:62257/1‑149 (MQ=255) gC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCgcgc < 4:79616/102‑1 (MQ=255) gC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTCGCGCAGCAGGcc > 4:6598/1‑149 (MQ=255) gC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTCGCGCAGCAGGcc < 8:33327/149‑1 (MQ=255) caggCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCTGTGACGCCGCCAGGATCAGTTCGCGCAGCAGGCCg < 8:41799/146‑1 (MQ=255) aCGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAg > 8:16131/1‑126 (MQ=255) aCGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAg < 7:16131/126‑1 (MQ=255) aCGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGAGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTCGCGCAGCAGGCCg > 4:155822/1‑148 (MQ=255) cGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTCGCGCAGCAGGCCGGa < 3:155822/149‑1 (MQ=255) | CGCCATTGGCCATACGACATGCCCACCTCGCGCTGGAACAGCCTGGCCACACTGCGGGCACTCATGTTCAGTTGTGCGCCGCATTGCTCCAGGGTCAGGTCCTGGGCCGGGTCCTGCAGGAAGCGCTCGCACCAGGC‑ACGCAGGCGTGCGTGCTGCGGCGTCGGGACGAAGGCATCGATGCGCCGGGCGGCGGCGAG‑TTCGTACAGGATCAGCGCCCGAGCATGCGCGCCGTCGCGCAGGTTCAGCACCCGTGACGCCGCCAGGATCAGTTCGCGCAGCAGGCCGGACAC > NC_002947/2356283‑2356572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |