| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,412,876 | G→C | 5.4% | intergenic (+140/‑281) | rlmM → / → PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,412,876 | 0 | G | C | 5.4% | 262.6 / 4.3 | 89 | intergenic (+140/‑281) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| Reads supporting (aligned to +/- strand): ref base G (43/41); new base C (2/3); total (45/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
CACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACTTTTTGTCGCGTTT > NC_002947/2412729‑2413021 | cACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGGTTGCGAAGGGAGGTGACGGGCATgg < 6:273557/149‑1 (MQ=255)cACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATgg < 7:165927/149‑1 (MQ=255)cACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATgg < 5:127726/149‑1 (MQ=255)cACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATg > 5:221751/1‑148 (MQ=255) gCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATg > 3:97891/1‑149 (MQ=255) ccAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATCCATGCCCGTCa < 6:242370/149‑1 (MQ=255) cAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTTTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGc > 7:187615/1‑142 (MQ=255) cAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTTTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGc < 8:187615/142‑1 (MQ=255) cAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCaa > 4:9605/1‑149 (MQ=255) cAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCaa < 6:77905/149‑1 (MQ=255) cACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAgc > 1:163235/1‑148 (MQ=255) cACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAgc < 2:163235/148‑1 (MQ=255) cgtcgtTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCt < 6:100732/149‑1 (MQ=255) gtcgtTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCt > 7:97254/1‑148 (MQ=255) gtcgtTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGATGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGACGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCt > 8:294438/1‑148 (MQ=255) tcgtTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACTCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGa < 4:274026/149‑1 (MQ=255) gtTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAg < 4:119400/148‑1 (MQ=255) cttctgcGTCTGCGTGTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCat > 2:303436/1‑149 (MQ=255) cttctgcGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGAt > 3:45393/1‑125 (MQ=255) cttctgcGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGAt < 4:45393/125‑1 (MQ=255) cttctgcGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGACATGGATGCCCGTCAAGCGCTGAGGCCCCat > 5:78606/1‑149 (MQ=255) ctgcgtctgcgtCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCatgga > 7:231110/1‑149 (MQ=255) ctgcgtctgcgtCTGCTTCTGCTTTTGCTGTTGCTTCTAAGAGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGTAGGCCGAGCGTAGGGCTTGCCAAGGGAGGTGACGGGCATGGATGCCCGTCAGGCGCTGAGGCCCCatgga > 7:116312/1‑149 (MQ=255) tgcgtctgcgtcTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCatggat > 2:150894/1‑149 (MQ=255) cgtctgcgtctgCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCatggat < 3:159236/147‑1 (MQ=255) cggctgcggctgcTTCTGCTTTTGCTGGTGCTTCTACGCGCGCGATAGTTCCGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCTTAGGGCTTGCGAAGGGAGGTGACGGGCTTGGATGCCCGTCAAGCGCTGAGGCCCCatggatg < 8:116312/145‑1 (MQ=14) gtctgcgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATggg < 4:167236/149‑1 (MQ=255) ctgcgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGc > 6:271946/1‑149 (MQ=255) tgcgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATCCATGCCCGTc < 2:272705/122‑1 (MQ=255) tgcgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATCCATGCCCGTc > 1:272705/1‑122 (MQ=255) tctgcttctgctTTTGCTGTTGCTTCTAAGCGCGCGATTGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCa < 3:9605/149‑1 (MQ=255) tctgcttctgctTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCa < 1:150894/149‑1 (MQ=255) cttctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAgcgc > 1:304058/1‑149 (MQ=255) cttctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAgcgc > 8:256029/1‑149 (MQ=255) ttctgcttTTGCTGTTGCTTCTAAGCGCGCTATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGcgcg > 2:59703/1‑149 (MQ=255) ttctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGcgcg < 8:231110/149‑1 (MQ=255) cTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCggg < 5:171247/148‑1 (MQ=37) cTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGa < 4:117833/149‑1 (MQ=37) gCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATCGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCaa < 1:303436/148‑1 (MQ=21) cTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGc < 5:271946/149‑1 (MQ=35) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGc > 7:137534/1‑121 (MQ=35) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGc < 8:137534/121‑1 (MQ=35) cgcgcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCg < 2:304058/149‑1 (MQ=38) gcgcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGa < 3:154734/149‑1 (MQ=37) gcgcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGa < 5:251722/149‑1 (MQ=37) gcgcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGa < 5:171541/149‑1 (MQ=37) gcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAgg > 7:233901/1‑149 (MQ=37) tAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGt < 6:55061/118‑1 (MQ=32) tAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGt > 5:55061/1‑118 (MQ=32) ttCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAAcccc > 5:75586/1‑149 (MQ=37) ttCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAAcccc > 1:187849/1‑149 (MQ=37) ttCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAAcccc > 1:161798/1‑149 (MQ=37) aGGCGACGCAGATTGCGAGTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGGGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGAGGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGa < 6:103346/149‑1 (MQ=255) aGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTGGCGAAGGGAGGTGACGGGCATGGATCCCCGACAACCGCTGAGGCCCCATGGATGGGGCCGGCAGGGCGTCAGCCCGGGAGCAAGCCCGCCGCGAGGCAACCCCgaa > 2:92642/1‑147 (MQ=11) cGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGAGGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑Cg < 8:97254/149‑1 (MQ=37) gACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCg < 2:305895/127‑1 (MQ=35) gACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCg > 1:305895/1‑127 (MQ=35) aCGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAggg < 7:24391/135‑1 (MQ=37) aCGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAggg > 8:24391/1‑135 (MQ=37) aGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAgcg > 5:151394/1‑148 (MQ=37) ttGCGACTTCAGGAGGTCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAg < 8:237195/148‑1 (MQ=37) cGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGATGGAAACCCGGAG‑CGTAGCGCATGGGc > 5:204478/1‑149 (MQ=255) gACTTCAGGCGGCCGAGCGGAGGGCTGGCGACGGGCGGTGACGGGCAGGGAGGCCCGTCAAGCGCTGAGGCCCCTTGGAGGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCACGGGcc < 7:294438/149‑1 (MQ=11) ttCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCg < 7:259749/112‑1 (MQ=35) ttCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCg > 8:259749/1‑112 (MQ=35) ttCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGga > 1:324631/1‑149 (MQ=37) ttCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGga > 3:57573/1‑149 (MQ=37) aggcggCCGAGCGTAGGGCTTGCGAAGGGAGGGGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGAGGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGgatga < 1:15646/149‑1 (MQ=255) ggcggCGGAGCGTTGGGGTTGCGAAGGGAGGTGTCGGGCTTGTATGCCCGTCAAGCGCTGAGGCCCCTTGGAGGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGgatgat < 8:233901/146‑1 (MQ=11) ggaggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGgatga > 6:89520/1‑148 (MQ=37) gaggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCatgg > 8:55042/1‑70 (MQ=35) gaggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCatgg < 7:55042/70‑1 (MQ=35) gCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAg > 2:48543/1‑147 (MQ=37) gggCTTGCGAAGGGAGGTGACGGGCAGGCATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑Gtt < 3:105530/149‑1 (MQ=255) ggCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑Gttt > 6:95907/1‑149 (MQ=39) gCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTg < 1:59703/148‑1 (MQ=39) cGAAGGGAGGTGACGGACATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTgg < 6:78606/148‑1 (MQ=255) gAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAAGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑AGTAGCGAAGGGGCCGGATAAAAGGAGCGCAGC‑GTTTTTTGGt > 2:295591/1‑148 (MQ=14) aaGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGtt > 4:212426/1‑148 (MQ=39) gAGGTGCCGGGCATGGAGCCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACttt < 1:92642/149‑1 (MQ=255) ggTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACttttt < 1:295591/149‑1 (MQ=39) ttGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACTTTTTg > 3:297200/2‑149 (MQ=255) gTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGGACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACTTTTTg > 4:120670/1‑149 (MQ=255) gTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGACGTAGCGCAGGGGCCGGATGATAg < 7:203122/122‑1 (MQ=25) gTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAg > 8:203122/1‑121 (MQ=35) gTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑Gtttttt > 5:300195/1‑137 (MQ=40) gTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑Gtttttt < 6:300195/137‑1 (MQ=40) tGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACTTTTTgc > 1:320616/1‑148 (MQ=39) ggccGGGCAGGGATGCCCGGCAAGCGCTGCGGCCCCAGGGATGGGGCCGGCACCGCTTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACTTTTTGt < 3:131863/146‑1 (MQ=14) gACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGATGCAAGCCCGGAGCGAGGGAACCCCGGCG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGGTTTTTTGTTTAAttttgtg > 1:99540/1‑146 (MQ=14) ggCATGGATCCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGTAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACTTTTTGTCGCGt < 5:6398/149‑1 (MQ=255) gCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACTTTTTGTCGCGtt > 5:188989/1‑149 (MQ=39) cATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACACCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGCAGGATAGGAGAGCAGC‑GGATTTTGGTTACTTATTGTCGCGgtt > 8:230940/1‑149 (MQ=14) | CACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAG‑CGTAGCGCAGGGGCCGGATGATAGGAGCGCAGC‑GTTTTTTGGTTACTTTTTGTCGCGTTT > NC_002947/2412729‑2413021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |