Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 284,586 T→A 8.5% intergenic (+33/+30) betT‑II → / ← atsK choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947284,5860TA 8.5% 151.6 / 3.6 56intergenic (+33/+30)betT‑II/atsKcholine/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
Reads supporting (aligned to +/- strand):  ref base T (25/26);  new base A (2/3);  total (27/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

ACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATT  >  NC_002947/284438‑284729
                                                                                                                                                     |                                                                                                                                               
aCCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCt                                                                                                                                                 <  3:77143/149‑1 (MQ=255)
  cTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTg                                                                                                                                               <  7:85857/149‑1 (MQ=255)
       cGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCcgc                                                                                                                                          >  7:132600/1‑149 (MQ=255)
          aGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa                                                                                                                                       <  6:137134/149‑1 (MQ=255)
            gCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAaga                                                                                                                                     <  8:132600/149‑1 (MQ=255)
              aGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAAGAgg                                                                                                                                   <  5:293868/149‑1 (MQ=255)
               gCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGc                                                                                                                                  <  2:229228/149‑1 (MQ=255)
               gCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGc                                                                                                                                  <  4:177937/149‑1 (MQ=255)
                 cAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGc                                                                                                                                  >  4:285153/1‑147 (MQ=255)
                  aGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCGCTCCTGTTCTGGCCTCTTCGCGGGCAAGCCCGCGAAGAGGCCAg                                                                                                                               <  8:86259/149‑1 (MQ=255)
                       tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAgg                                                                                                                          >  5:45738/1‑149 (MQ=255)
                            ccTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAAc                                                                                                                      >  1:86944/1‑149 (MQ=255)
                              tggtggGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTAGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGc                                                                                                                   >  2:255164/1‑149 (MQ=255)
                              tggtggGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTATTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGc                                                                                                                   >  5:113907/1‑149 (MQ=255)
                              tggtggGCTACAGCAAGGAGCACATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGCTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGCGCTTGCCCGCGAAGCGGCCAGACAGGCAACCg                                                                                                                    >  6:136775/1‑148 (MQ=255)
                                      tACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCaa                                                                                                                       >  3:307214/1‑137 (MQ=255)
                                        cAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTg                                                                                                         >  5:169718/1‑149 (MQ=255)
                                           cAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCAt                                                                                                      >  4:250319/1‑149 (MQ=255)
                                             agtcgCATATCATCAACCACATCGTCTACCAGTACTTGGGGAACTTGCTGTACGTCCACCTGGTCGGCTTTCAAAGGTCTCTTGTCGGGGCCTCTTGGGGGGCTGCCCGGCTATTTGGCCAGACAGGCAACCGCTAGAAAGGTGCATcc                                                                                                    <  4:29606/145‑1 (MQ=255)
                                                 gCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCGCTTAGCGGGCATGGCCCCGCACAGGCCAGCCAAGCACCCCCGAGAAAAGTGCaacaccc                                                                                                 >  5:223920/1‑142 (MQ=255)
                                                     atcatcAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGAt                                                                                            >  5:74831/1‑149 (MQ=255)
                                                        atcaACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGt                                                                                         <  1:255164/149‑1 (MQ=255)
                                                         tcaACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTc                                                                                        >  5:336920/1‑149 (MQ=255)
                                                          caACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAgg                                                                                              <  6:110574/142‑1 (MQ=255)
                                                          caACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAgg                                                                                              >  5:110574/1‑142 (MQ=255)
                                                                cATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGt                                                                                 <  8:223534/149‑1 (MQ=255)
                                                                   ccTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGa                                                                                                                                        >  2:254950/1‑91 (MQ=255)
                                                                   ccTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGa                                                                                                                                        <  1:254950/91‑1 (MQ=255)
                                                                         ccAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGc                                                                                                        >  5:273214/1‑117 (MQ=255)
                                                                         ccAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGc                                                                                                        <  6:273214/117‑1 (MQ=255)
                                                                          cAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAg                                                                                               >  1:120344/1‑125 (MQ=255)
                                                                          cAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACccg                                                                       >  7:84219/1‑149 (MQ=255)
                                                                            gTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACccgcc                                                                     >  8:85476/1‑149 (MQ=255)
                                                                                gAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGGTGGTCGCCCGGTGCATCACCCCCCgggt                                                                 >  6:27354/1‑147 (MQ=255)
                                                                                    cGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTtcg                                                               <  6:113907/148‑1 (MQ=255)
                                                                                       cacaTGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTtcggtcg                                                           <  6:169718/149‑1 (MQ=255)
                                                                                        acaTGCAGTACCTGCACCGGGTCCGCTGACCAAGCTCGCCTGTCCTGGCCGCTGGGGGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTtcggtcgg                                                          <  5:27354/149‑1 (MQ=255)
                                                                                           tccAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGCCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTaa                                                       <  3:161286/147‑1 (MQ=255)
                                                                                                   gagagcttGGTCAGCGGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTaa                                                       <  1:16653/134‑1 (MQ=255)
                                                                                                   gagagcttGGTCAGCGGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTaa                                                       >  2:16653/8‑141 (MQ=255)
                                                                                                       aCCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGCGGCCAGACAGGCCGCCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGc                                            >  1:288949/1‑148 (MQ=255)
                                                                                                               cGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTg                                   >  3:83947/1‑149 (MQ=255)
                                                                                                                gCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTgg                                  <  6:336920/149‑1 (MQ=255)
                                                                                                                    aCCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCa                              >  3:115505/1‑149 (MQ=255)
                                                                                                                     ccAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCAc                             <  3:285153/149‑1 (MQ=255)
                                                                                                                      cAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCAcg                            >  8:302088/1‑149 (MQ=255)
                                                                                                                       aaGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCAcgc                           <  5:171755/149‑1 (MQ=255)
                                                                                                                         gCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCgg                         <  4:83947/149‑1 (MQ=255)
                                                                                                                         gCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCgg                         <  2:86944/149‑1 (MQ=255)
                                                                                                                          ctgtcgtgtccggGCCTCTTCGGGGGGTTCCCGGCTATGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCgg                         <  6:45738/142‑1 (MQ=255)
                                                                                                                          ctctCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATc                                                                            <  4:239236/97‑1 (MQ=255)
                                                                                                                          ctctCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATc                                                                            >  3:239236/1‑97 (MQ=255)
                                                                                                                                  tcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCa                 <  3:300397/148‑1 (MQ=255)
                                                                                                                                  tcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCa                 <  3:250319/148‑1 (MQ=255)
                                                                                                                                       gCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCTCCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGc           <  5:136775/149‑1 (MQ=255)
                                                                                                                                            ttCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGt      >  5:299392/1‑149 (MQ=255)
                                                                                                                                                cgGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCAtt  <  7:85476/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                               
ACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATT  >  NC_002947/284438‑284729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: