Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,563,845 C→T 100% intergenic (+56/‑57) PP_2247 → / → PP_2248 endoribonuclease/putative transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,563,8450CT100.0% 159.1 / NA 48intergenic (+56/‑57)PP_2247/PP_2248endoribonuclease/putative transporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (25/23);  total (25/23)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GCTACCGGTGCGTTCCACCGTGGCCTCGGCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGCCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCAGGGCGGGAACTGTTGTTGTTCTT  >  NC_002947/2563702‑2563990
                                                                                                                                               |                                                                                                                                                 
gcTACCGGTGCGTTCCACCGTGGCCTCGGCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTa                                                                                                                                              <  3:295053/149‑1 (MQ=255)
gcTACCGGTGCGTTCCACCGTGGCCTCGGCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTa                                                                                                                                              <  3:290355/149‑1 (MQ=255)
  tACCGGTGCGTTCCACCGTGGCCTCGGCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACg                                                                                                                                            >  7:8902/1‑149 (MQ=255)
   aCCGGTGCGTTCCACCGTGGCCTCGGCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGCTGGGCTGCAAGGCCGTCCCTACGa                                                                                                                                           >  4:224018/1‑149 (MQ=255)
     cGGTGCGTTCCACCGTGGCCTCGGCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGAcc                                                                                                                                         >  5:10028/1‑149 (MQ=255)
                aCCGTGGCCTCGGCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACg                                                                                                                              >  6:183839/1‑149 (MQ=255)
                      gCCTCGGCGTTGGCCCTGGGCGTGTATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGAt                                                                                                                         <  7:301305/148‑1 (MQ=255)
                            gCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGG‑CGTCCCTACGACCGGTATGCGACGGCGATGACAAaac                                                                                                                 <  7:57887/149‑1 (MQ=255)
                              gTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACaaa                                                                                                                   >  6:63885/1‑146 (MQ=255)
                              gTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACaaa                                                                                                                   <  5:63885/146‑1 (MQ=255)
                              gTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAaac                                                                                                                 >  5:5018/1‑148 (MQ=255)
                                        ggCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATaaa                                                                                                        <  8:8902/147‑1 (MQ=255)
                                              gATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCTGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCagag                                                                                                 <  7:149607/148‑1 (MQ=255)
                                              gATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAgg                                                                                                <  2:199871/149‑1 (MQ=255)
                                                       aTCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATg                                                                                        >  7:261725/1‑148 (MQ=255)
                                                         cGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGCATGCGACGGCGATGACAAAACAACAATAAATCCGGAGGTTCACATGc                                                                                       >  3:71668/1‑147 (MQ=255)
                                                          gAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCaa                                                                                     <  6:5018/148‑1 (MQ=255)
                                                          gAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAag                                                                                    >  3:56218/1‑149 (MQ=255)
                                                             gTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGagc                                                                                 <  8:261725/149‑1 (MQ=255)
                                                              tGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGagc                                                                                 <  2:246041/148‑1 (MQ=255)
                                                              tGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGagc                                                                                 >  1:246041/1‑148 (MQ=255)
                                                                   gCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGagcagc                                                                              <  1:168006/146‑1 (MQ=255)
                                                                   gCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGagcagc                                                                              >  2:168006/1‑146 (MQ=255)
                                                                     gTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTg                                                                            >  1:7777/1‑146 (MQ=255)
                                                                      ttCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGa                                                                        <  6:10028/149‑1 (MQ=255)
                                                                      ttCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGa                                                                        <  2:7777/149‑1 (MQ=255)
                                                                          tcgGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGc                                                                    <  5:183839/149‑1 (MQ=255)
                                                                               gACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGgcg                                                               >  4:223735/1‑149 (MQ=255)
                                                                                  gCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCAt                                                            >  7:32785/1‑149 (MQ=255)
                                                                                    cTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGTCGGCGAAGACAAAACAACAATAAATCAAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCAttt                                                          >  2:155264/1‑149 (MQ=255)
                                                                                     tGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAaacaac                                                                                                              <  2:264348/96‑1 (MQ=255)
                                                                                     tGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAaacaac                                                                                                              >  1:264348/1‑96 (MQ=255)
                                                                                              aaaGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGa                                                >  3:126059/1‑149 (MQ=255)
                                                                                                            gagGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCggg                                   <  3:223735/148‑1 (MQ=255)
                                                                                                             agGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCGTTTGTCGGCGTGATCGTgg                                          <  2:93461/140‑1 (MQ=255)
                                                                                                             agGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCGTTTGTCGGCGTGATCGTgg                                          >  1:93461/1‑140 (MQ=255)
                                                                                                                 gACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGc                             >  5:203253/1‑149 (MQ=255)
                                                                                                                 gACCTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGc                             >  2:167326/1‑149 (MQ=255)
                                                                                                                   ccTTGTGTCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCtt                           <  1:167326/149‑1 (MQ=255)
                                                                                                                       gtgtCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCa                         <  3:224018/147‑1 (MQ=255)
                                                                                                                       gtgtCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCAg                        <  6:169746/148‑1 (MQ=255)
                                                                                                                          tCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGtt                                <  6:148798/137‑1 (MQ=255)
                                                                                                                          tCGCGATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGtt                                >  5:148798/1‑137 (MQ=255)
                                                                                                                             cgATGGGCTGCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCAGGGCggg                  >  3:144162/1‑148 (MQ=255)
                                                                                                                                      gCAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCAGGGCGGGAACtgttgtt        >  7:53677/1‑149 (MQ=255)
                                                                                                                                       cAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCAGGGCGGGAACtgttgttg       >  2:276818/1‑149 (MQ=255)
                                                                                                                                       cAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCAGGGCGGGAACtgttgttg       <  2:10386/149‑1 (MQ=255)
                                                                                                                                       cAAGGCCGTCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCAGGGCGGGAACtgttgttg       >  4:37923/1‑149 (MQ=255)
                                                                                                                                            ccgtcCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGACGTGATCGTGGGGGCGGGGTTCGCTTCAGGGCGGGAACTGTTGTTGTTCtt  >  5:38690/1‑149 (MQ=255)
                                                                                                                                               |                                                                                                                                                 
GCTACCGGTGCGTTCCACCGTGGCCTCGGCGTTGGCCCTGGGCGTGGATGTGGAGATCGAAGTGCAGGCGTTCGTCGGCGACGCCTGACCGGGCAAAGAGCCCGTGTAGAGGCGACCTTGTGTCGCGATGGGCTGCAAGGCCGCCCCTACGACCGGTATGCGACGGCGATGACAAAACAACAATAAATCCAGAGGTTCACATGCAAGAGCAGCTGAAGATCGCCGGCGCATTTGTCGGCGTGATCGTGGGGGCGGGGTTCGCTTCAGGGCGGGAACTGTTGTTGTTCTT  >  NC_002947/2563702‑2563990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑