Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,097,123 | G→T | 9.1% | E43* (GAA→TAA) ‡ | PP_2705 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,097,123 | 0 | G | T | 9.1% | 161.5 / 7.2 | 55 | E43* (GAA→TAA) ‡ | PP_2705 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (27/23); new base T (3/2); total (30/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.45e-01 |
GCTCTGAGCCGAAGCGCGTCGTGACAGGCTTCATCCCGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTGTTTTATGCCGAAGT > NC_002947/3096977‑3097262 | gCTCTGAGCCGAAGCGCGTCGTGACAGGCTTCATCCCGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGaa < 5:266745/149‑1 (MQ=255) gAAGCGCGTCGTGACAGGCTTCATCCCGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGCTTCAACctgctgca < 8:137893/149‑3 (MQ=255) tcgtGACAGGCGTCATCCCGGTTTCGTCGCTCGTGCGATTCAAACCGACGGACCAGGCTCGGGCCCAACTCGGTGCTGCAATGGCGTCTATCGAGTACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGta < 1:251659/149‑1 (MQ=255) aGGCTTCATCCCGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGt > 1:245014/1‑149 (MQ=255) gCTTCATCCCGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAGGGGGCTGCCAGCAGGCTTCAACctgctgcagc > 2:250601/1‑131 (MQ=255) gCTTCATCCCGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAGGGGGCTGCCAGCAGGCTTCAACctgctgcagc < 1:250601/135‑5 (MQ=255) tCCCGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCgg > 6:108602/1‑149 (MQ=255) cccGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGCCGTATACCTCGTCACAGCGGc > 8:209392/1‑149 (MQ=255) gtcgCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGaa < 5:108602/148‑1 (MQ=255) gCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGcc > 8:250807/1‑149 (MQ=255) gCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTcgcg < 7:250807/148‑1 (MQ=255) acCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAg > 4:143811/1‑131 (MQ=255) acCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAg < 3:143811/131‑1 (MQ=255) ggACCAGGCTCGGTCCAAAGATGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGaa < 6:85693/124‑1 (MQ=255) ggTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGa > 6:142548/1‑148 (MQ=255) gTCCAAAGAGGGTGCTGCAATGGCGACAATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGAGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGaaa > 1:183456/1‑149 (MQ=255) aaaGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGAc > 6:153105/1‑126 (MQ=255) aaaGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGAc < 5:153105/126‑1 (MQ=255) gggTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCAtt < 6:220875/136‑1 (MQ=255) gggTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCAtt > 5:220875/1‑136 (MQ=255) ggTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAACCCGCCAACcg > 8:306520/1‑149 (MQ=255) ggTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGACACCcg > 8:20519/1‑149 (MQ=255) tgctgcAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACcgc > 7:308557/1‑148 (MQ=255) tgcAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGa > 3:229376/1‑147 (MQ=255) tgcAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGa < 4:229376/147‑1 (MQ=255) gcAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATAcc > 8:44105/1‑75 (MQ=255) gcAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATAcc < 7:44105/75‑1 (MQ=255) gcAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGAttt > 7:98738/1‑149 (MQ=255) aTGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCAc < 5:142548/149‑1 (MQ=255) gACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGt > 2:33455/1‑149 (MQ=255) tCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCg < 1:286407/56‑1 (MQ=255) tCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCg > 2:286407/1‑56 (MQ=255) tCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGttt > 3:110897/1‑146 (MQ=255) a‑cacCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCa > 4:183717/1‑145 (MQ=255) a‑cacCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCa < 3:183717/145‑1 (MQ=255) a‑cacCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAAc < 7:209392/149‑1 (MQ=255) cGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCACCCGCGAt > 8:254181/1‑127 (MQ=255) agaACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCg < 1:257192/94‑1 (MQ=255) agaACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCg > 2:257192/1‑94 (MQ=255) ttGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTg > 2:128349/1‑149 (MQ=255) aaaGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGa < 5:306038/114‑1 (MQ=255) aaaGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGa > 6:306038/1‑114 (MQ=255) aaaGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCa < 4:111790/129‑1 (MQ=255) aaaGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCa > 3:111790/1‑129 (MQ=255) aaaGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGt > 6:86536/1‑137 (MQ=255) aaaGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGt < 5:86536/137‑1 (MQ=255) aGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACGGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTGTTTTAt < 5:143385/149‑1 (MQ=255) aGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTGTTTTAt < 8:308557/149‑1 (MQ=255) ctgccagcagGCTTCAACCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCCGCTGTTTTATGcc > 4:10774/5‑148 (MQ=255) ccagcagGCTTCAACCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTTCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTGTTTTATGCCGAAg > 3:223001/2‑149 (MQ=255) cagcagGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTGTTTTATGCCGAAGt < 8:98738/149‑1 (MQ=255) gcagGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGTCAGCTGttt > 6:274344/1‑136 (MQ=255) gcagGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGTCAGCTGttt < 5:274344/136‑1 (MQ=255) ggTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAACCCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTGTTTTa > 6:331121/1‑135 (MQ=255) ggTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTGTTTTa < 5:331121/135‑1 (MQ=255) | GCTCTGAGCCGAAGCGCGTCGTGACAGGCTTCATCCCGTTATCGTCGCTCTGGCGATTCACACCGACGGACCAGGCTCGGTCCAAAGAGGGTGCTGCAATGGCGACTATCGA‑CACCGAGAACCTTGCAAAGGGGCTG‑CAGCAGGTTGAAGCCTGCTGGCAGGCGTATACCTCGTCACAGCGGCTTGTCGAAGGCCTCGCGGGCAGCGACCGGAGCAGTGCCATTGAAACCGCCAACCGCGATTTCACCAGGTTTCAGAACCAGTGCCAGCTGTTTTATGCCGAAGT > NC_002947/3096977‑3097262 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |