Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,327,196 | A→G | 9.3% | V337A (GTC→GCC) ‡ | udg ← | UDP‑glucose 6‑dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,327,196 | 0 | A | G | 9.3% | 109.3 / 2.9 | 44 | V337A (GTC→GCC) ‡ | udg | UDP‑glucose 6‑dehydrogenase |
Reads supporting (aligned to +/- strand): ref base A (18/21); new base G (2/2); total (21/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.42e-01 |
CAGGGCATCGGCGCCCCGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTGAACAGCCGGCCCTTCTGCTGCTCGTT > NC_002947/3327048‑3327332 | cAGGGCATCGGCGCCCCGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGa > 6:48682/1‑149 (MQ=255) tCGGCGCCCCGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCt > 1:184357/1‑149 (MQ=255) cGGCGCCCCGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTg > 3:205752/1‑149 (MQ=255) cgcCCCGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCCGGGTCCTGCTGGaa < 6:115087/149‑1 (MQ=255) cgcCCCGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGaa < 4:274485/149‑1 (MQ=255) cgcCCCGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGGCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGaa < 7:89694/149‑1 (MQ=255) ccGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCtt > 3:224066/1‑149 (MQ=255) cGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTc < 3:47807/149‑1 (MQ=255) cAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTcgc < 5:48682/149‑1 (MQ=255) cGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGa < 6:120444/149‑1 (MQ=255) gCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGat < 4:224066/149‑1 (MQ=255) cATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGata < 7:13415/149‑1 (MQ=255) aTCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGata > 3:304445/1‑148 (MQ=255) gTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCCGGGTCCTGCTGGAAg < 8:259440/134‑1 (MQ=255) gTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCCGGGTCCTGCTGGAAg > 7:259440/1‑134 (MQ=255) tCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCAtt > 5:131956/1‑149 (MQ=255) cTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTg < 3:169994/148‑1 (MQ=255) ttGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTgg > 1:176727/1‑148 (MQ=255) cAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTAt < 8:213493/148‑1 (MQ=255) gggCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTgg < 8:157458/149‑1 (MQ=255) aCCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTg > 8:115343/1‑138 (MQ=255) aCCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTg < 7:115343/138‑1 (MQ=255) aCCAGTTGCAGGTCCGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCTCGCCCTCGGCCCACAGTCCTTCCAGCAGAACCCGGCTGGAAGCTTCGCGCATATCATAGGTATTGTGCtt > 8:304350/1‑149 (MQ=255) gTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTgg < 5:320961/135‑1 (MQ=255) gTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTgg > 6:320961/1‑135 (MQ=255) aGGTCGGCACGCGGGCCGTAGTGGGGCCGGGTTTCTTCCATGGCCTTAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGCCCCGGCTGGa > 7:47578/1‑110 (MQ=255) aGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACaa > 6:101817/1‑149 (MQ=255) aGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGACGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCACCAGGACCCGGCTGGa < 8:47578/110‑1 (MQ=255) gcgGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAgg < 4:205752/149‑1 (MQ=255) gggCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGc < 2:184357/149‑1 (MQ=255) cGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAac < 7:18555/149‑1 (MQ=255) tGGCGTCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCGTGCACCCGCGCGCCAGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCtt < 7:304350/149‑1 (MQ=255) ttcCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCCGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGgccgc > 5:311592/1‑149 (MQ=255) gCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGt < 2:176727/148‑1 (MQ=255) tGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGAt < 5:101817/149‑1 (MQ=255) aCCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTATTCCCGCCGGCCGGCGGGGTAATGGCGCTGGATGTTGCTgca > 1:275067/1‑147 (MQ=255) ccGCGCGCCCGCGGCCCGCAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAACCCCCTTGCCCCGCACGCCGCCGGGGTAATGGCGCTGGATCTTGCTGaa > 2:205306/1‑147 (MQ=255) ccGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTGaa > 2:178270/1‑147 (MQ=255) ccactacgGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTGAACAGCCgg < 5:129996/143‑1 (MQ=255) ccGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTg < 4:72517/137‑1 (MQ=255) ccGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTg > 3:72517/1‑137 (MQ=255) ccACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTGAACAGCCGGCCCTTctgct > 3:54673/1‑149 (MQ=255) cacaGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTGAACAGCCGGCCCTTctgctg > 2:2045/1‑149 (MQ=255) acaGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTGAACAGCCGGCCCTTCtgctgc > 6:6574/1‑149 (MQ=255) gCTTCCAGCCGGGTCCTGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTGAACAGCCGGCCCTTCTGCTGCTCGtt > 1:264440/1‑149 (MQ=255) | CAGGGCATCGGCGCCCCGCAACGCATCGTCCTTGCAGGGCACCAGTTGCAGGTCGGCACGCGGGCCGTAGTGGCGCCGGATTTCTTCCATGGCCTGAGGGTCGTGAGCCTGCACCCGCGCGCCCGCGGCCCACAGTGCTTCCAGCAGGACCCGGCTGGAAGCTTCGCGGATATCATTGGTATTGGGCTTGAACGACAACCCCCACAGGGCAAACACCTTGCCCCGCAGGCCGCCGGGGTAATGGCGCTGGATCTTGCTGAACAGCCGGCCCTTCTGCTGCTCGTT > NC_002947/3327048‑3327332 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |