| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,343,483 | T→C | 100% | intergenic (‑477/‑115) | yefM ← / → PP_5541 | YoeB‑YefM toxin‑antitoxin system antitoxin/DNA‑binding transcriptional repressor/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,343,483 | 0 | T | C | 100.0% | 105.0 / NA | 32 | intergenic (‑477/‑115) | yefM/PP_5541 | YoeB‑YefM toxin‑antitoxin system antitoxin/DNA‑binding transcriptional repressor/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/20); total (12/20) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GAGCACTCAGTCGGCGAAAGTGGGTACTTCCCATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCTGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATGAGTTCTAGGTCCGTTCCATGCGTAATCGCGGCAAAATCTATTG > NC_002947/3343341‑3343623 | gagCACTCAGTCGGCGAAAGTGGGTACTTCCCATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTaaa < 7:74371/149‑1 (MQ=255)gagCACTCAGTCGGCGAAAGTGGGTACTTCCCATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTaaa > 5:263609/1‑149 (MQ=255) ggCGAAAGTGGGTACTTCCCATTACGATTTTGAGGGTTACGAAAGGATGCTCAACAGTCTGGCGGCGCACGTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCt < 5:26327/149‑1 (MQ=255) gCGAAAGTGGGTACTTCCCATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTg < 5:90577/149‑1 (MQ=255) aaGTGGGTACTTCCCATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTaaa < 7:253300/149‑1 (MQ=255) ggTACTTCCCATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTaaaaaaa < 7:236491/148‑1 (MQ=255) ggTACTTCCCATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAAt < 4:85326/149‑1 (MQ=255) cTTCCCATTACGTTTTTGAGCTTTCCGAAAGGATTCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTaa < 1:155095/149‑1 (MQ=255) cccATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGTGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAac < 3:82486/147‑1 (MQ=255) cccATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTaa > 3:251764/1‑146 (MQ=255) cccATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTaa < 4:251764/146‑1 (MQ=255) gATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCtt > 3:208788/1‑148 (MQ=255) ttCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGAtt < 3:151731/149‑1 (MQ=255) cGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCAt > 1:9985/1‑149 (MQ=255) aGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCATAAGCAGTGGATTCATTGGa < 2:301978/149‑1 (MQ=255) tGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAg > 2:10890/1‑149 (MQ=255) aaCAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGgtg > 2:18001/1‑149 (MQ=255) aaCAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGgtg > 7:78215/1‑149 (MQ=255) gTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCATTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTAt > 8:174917/1‑148 (MQ=255) gTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTAtt < 4:208788/149‑1 (MQ=255) tGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTg < 1:10890/149‑1 (MQ=255) gcggcgCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCt < 2:104712/146‑1 (MQ=255) cggcgCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGtct < 8:78215/149‑1 (MQ=255) ttCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGCGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTc > 5:7114/1‑148 (MQ=255) cccGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATg < 7:160391/148‑1 (MQ=255) tCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATGAGTTc > 1:203305/1‑147 (MQ=255) aTGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATCTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATGAGTTCTAg < 4:294871/148‑1 (MQ=255) cTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATGAGTTCTAGGTcc < 2:9985/149‑1 (MQ=255) tGAAGGGGGCTGGTGGTGCGATCACGGCCGTTAAACGAAAAGCAGATGAAAAAAAATCTAACACACACATTAAGCAGTCGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATGAGTTCTAGGTCCGTTCCATGCg > 7:220414/1‑148 (MQ=255) cGATCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATGAGTTCTAGGTCCGTTCCATGCGTAATCGCGCCAAAATCTAt > 1:127692/1‑149 (MQ=255) gaacACGGCCGTTAAACGAAACGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGgt < 8:116441/76‑1 (MQ=255) aTCACGGCCGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATGAGTTCTAGGTCCGTTCCATGCGTAATCGCGGCAAAATCTATTg < 6:7114/149‑1 (MQ=255) | GAGCACTCAGTCGGCGAAAGTGGGTACTTCCCATTCCGATTTTGAGCGTTCCGAAAGGATGCTCAACAGTCTGGCGGCGCACCTTCATCTTCCCCGGATCATGCTCCAGTCGAATGAAGGGGGCTGGTGGTGCGATCACGGCTGTTAAACGAAAAGCAGCTGTAAAAAAATGTAACACACACCTTAAGCAGTGGATTCATTGGAACAGCGGTGTATTCTGTCTCTCCAGTCAAGAATATGAGTTCTAGGTCCGTTCCATGCGTAATCGCGGCAAAATCTATTG > NC_002947/3343341‑3343623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |