Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,520,084 | T→A | 16.3% | intergenic (+703/‑177) | PP_5580 → / → PP_5582 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,520,084 | 0 | T | A | 16.3% | 97.0 / 12.7 | 43 | intergenic (+703/‑177) | PP_5580/PP_5582 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (23/13); new base A (5/2); total (28/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.92e-01 |
TGACGATGAAGGAAAGGCTATTAGGGCGTCTGGGGTCATATTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGATTGTTTGTTGTGTCTCAG > NC_002947/3519937‑3520232 | tGACGATGAAGGAAAGGCTATTAGGGCGTCTGGGGTCATATTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTAt < 8:141646/148‑1 (MQ=255) aCGATGAAGGAAAGGCTATTAGGGCGTCTGGGGTCATATTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTTTgc < 6:58617/148‑1 (MQ=255) gAAAGGCTATTAGGGCGTCTGGGGTCATATTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGATTATGCAAGCAATAGt > 3:177498/1‑149 (MQ=255) tCATATTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCAtt > 3:54181/1‑149 (MQ=255) tCATATTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCAtt > 3:131131/1‑149 (MQ=255) tCATATTTCAGAATCGAGTCACAGATATATAAAGACGCATGCAGGACGATGGTGAATATTGGAGCTATGAATATATGTGTTAAGCAGCACGGATAGTATCAATTCTTGCTTATGCAAGCAAAAATGCTACTCTTAAAGAAATAATCaat > 8:51457/1‑147 (MQ=255) atatTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGa < 5:94324/149‑1 (MQ=255) tatTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAg < 4:54181/149‑1 (MQ=255) tatTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAg < 4:131131/149‑1 (MQ=255) tttGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCg > 3:248171/1‑149 (MQ=255) cGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCg > 4:271507/1‑148 (MQ=255) ccAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGAAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGt > 1:310731/1‑149 (MQ=255) ccAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGAGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAAAATTCATTGAGCGAGATGGCGAAAGCGt > 6:321720/1‑149 (MQ=255) aTGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAAGATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGGTTGt > 4:248011/1‑149 (MQ=255) gaCGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACaa < 3:271507/149‑1 (MQ=255) ggTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGAc < 8:5513/141‑1 (MQ=255) ggTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACaacatcg > 7:5513/1‑143 (MQ=255) tGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCa > 1:292633/1‑148 (MQ=255) tGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGGTGGCTTGTATTTTTACGACAAAAATTCa > 4:148463/1‑148 (MQ=255) atTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTg > 3:233816/1‑149 (MQ=255) ggTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCa < 7:51457/148‑1 (MQ=255) cTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGATGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCtt > 5:326112/1‑148 (MQ=255) cggTGTGAAGCCCCCCGGATAGACACACTGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTa < 4:177498/148‑1 (MQ=255) gtgAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTg > 4:57437/1‑149 (MQ=255) agcaCGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAAtt < 3:57437/149‑1 (MQ=255) gcaCGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAg < 8:54982/138‑1 (MQ=255) gcaCGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAg > 7:54982/1‑138 (MQ=255) ggATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGc < 6:211959/135‑1 (MQ=255) ggATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGc > 5:211959/1‑135 (MQ=255) gTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGa < 5:321720/148‑1 (MQ=255) tATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAg > 1:47616/1‑128 (MQ=255) tATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAg < 2:47616/128‑1 (MQ=255) tATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGAtt > 4:250736/1‑149 (MQ=255) tATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGAtt > 2:108757/1‑149 (MQ=255) tATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGAtt > 3:22070/1‑149 (MQ=255) ctattgcttgcaTAAGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGAttgt > 6:177506/5‑149 (MQ=255) tattgcttgcaTAAGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCtt < 4:283448/76‑1 (MQ=39) tattgcttgcaTAAGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCtt > 3:283448/4‑79 (MQ=39) tattgcttgcaTAAGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGaa < 4:34187/130‑1 (MQ=255) tattgcttgcaTAAGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGaa > 3:34187/4‑133 (MQ=255) attgcttgcaTAAGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGGGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGAttgttt > 5:228671/3‑149 (MQ=255) ttgcttgcaTAAGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGAttgtttg > 8:69659/2‑149 (MQ=255) gcttgcttATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGATtgtttgtt > 5:84028/1‑149 (MQ=255) gcttATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGATTGTTTGTtgtg > 8:41811/1‑148 (MQ=255) tGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGATTGTTTGTTGTGTCTCAg < 4:248171/149‑1 (MQ=255) tGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGATTGTTTGTTGTGTCTCAg < 4:22070/149‑1 (MQ=255) | TGACGATGAAGGAAAGGCTATTAGGGCGTCTGGGGTCATATTTGAGAATCGAGTCCCAGATATATCATGCCGCCTGGAGGACGATGGTGAATATTGGTGCTATGAATATAGGTGTGAAGCAGCACGGATAGTATCAATGCTTGCTTATGCAAGCAATAGTGCTCCTGGTACAGAAATATTCATTGAGCGAGATGGCGAAAGCGTGGTTGGCTTGTATTTTTACGACAAAAATTCAAAAGTGCACCTTTACAAAGTCTAGCTGTCGAATTTATGCGTGATTGTTTGTTGTGTCTCAG > NC_002947/3519937‑3520232 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |