Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,604,695 | G→T | 8.4% | intergenic (‑42/‑86) | PP_3179 ← / → PP_3180 | LysR family transcriptional regulator/Smp‑30/Cgr1 family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,604,695 | 0 | G | T | 8.4% | 158.0 / 2.5 | 54 | intergenic (‑42/‑86) | PP_3179/PP_3180 | LysR family transcriptional regulator/Smp‑30/Cgr1 family protein |
Reads supporting (aligned to +/- strand): ref base G (19/30); new base T (3/2); total (22/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.88e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01 |
GCCTGGCTCAGCGGCGGTTGCGCCATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGC > NC_002947/3604547‑3604837 | gCCTGGCTCAGCGGCGGTTGCGCCATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATg > 4:309873/1‑149 (MQ=255) gCCTGGCTCAGCGGCGGTTGCGCCATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATg > 2:126909/1‑149 (MQ=255) ccTGGCTCAGCGGCGGTTGCGCCATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATgg < 4:117140/149‑1 (MQ=255) gcggcgGTTGCGCCATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCCATGGATATCacc < 1:164860/149‑3 (MQ=255) gTTGCGCCATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCa < 8:226825/149‑1 (MQ=255) gcCATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCtt > 3:62028/1‑149 (MQ=255) ccATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGACCAAGCGTGATTCGATCATCCAGCATTCCTCCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCatt > 6:163510/1‑149 (MQ=255) tgtgCAGGCTCTGTGCGTCCTTGTGAAAGTTCAGCTCTTCTGCCACGGCGATGAACTGCCTGATCAAGCGTGTTTCTATCATCCAGCATTCCTGCATCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTaa < 6:82275/149‑1 (MQ=255) tgCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAat < 7:218278/148‑1 (MQ=255) gCAGGCGCTGTGCGGCCTTGTGAAAGTGAAGCTCATCGGCCACGGCGATGAACTGCATGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGAGACTCGGCGGTGATATCCATTGGATATCAAAGTTGCATGCTTTTAatat > 5:257696/1‑149 (MQ=255) cAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATAtt < 8:268385/149‑1 (MQ=255) ggCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTaa < 3:277415/149‑1 (MQ=255) gcgcTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAg > 6:248414/1‑149 (MQ=255) ggCCTTGTGTAAGTGCAGCTCTTGGTCCACGGCGATGAAGTGCGTTAGCAAGCGTGTTTCGATCATCGAGCATTGCTGGAGCGTGGCGAGTCGGCGGTGATATCCATGTGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGAtt < 4:129925/149‑1 (MQ=255) ggCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGAtt < 6:105570/149‑1 (MQ=255) gCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTaa < 5:215787/132‑1 (MQ=255) gCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTaa > 6:215787/1‑132 (MQ=255) gtgAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGAttttttt < 5:248414/148‑1 (MQ=255) gtgAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGAttttttt < 3:108840/148‑1 (MQ=255) gtgAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTttg > 2:48103/1‑149 (MQ=255) aaaGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTttgttg < 3:234569/149‑1 (MQ=255) gTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGata < 5:305704/149‑1 (MQ=255) cAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCg > 3:223595/1‑149 (MQ=255) cAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCg > 5:221964/1‑149 (MQ=255) cAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCg > 6:202143/1‑149 (MQ=255) aGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCg > 4:303431/1‑148 (MQ=255) ctctTCGGCCTCGGCGATGAACTGCCTGAGCAAGCGTTGTTCGATCATACAGCATTCCTGCAGGGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGTTATCGTaa < 4:223595/149‑1 (MQ=255) ctctTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGt > 6:119877/1‑147 (MQ=255) ctctTCGGCCAAGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTaa < 6:221964/149‑1 (MQ=255) cGGCCACGGCGATGTACTGCCTGAGCAAGCGTGTTTCTATGTTCCAGCTTTCCTTCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCATTGTTGCATGCTTTTAATATTAAGTCTTTGTTTTTTTTGTTGATATCGTAAGaaa < 5:163510/148‑1 (MQ=255) gCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGga < 4:62028/149‑1 (MQ=255) gATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGaa < 1:126909/149‑1 (MQ=255) gATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGaa < 1:48103/149‑1 (MQ=255) gATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGaa < 3:309873/149‑1 (MQ=255) aaCTGACTGAGCAAGCGTGTTTCGATAATCCAGCATTCATGCAGCGTGGCGACTCGGCGTTGATATACATGGGATATAAAAGTTGCATGCTTATAATATTAAGTCATTTATTTTTTTGTTGATATCGTAAGAAAGTAGAATTGAAgg > 8:47741/1‑147 (MQ=255) aCTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTa < 5:119877/148‑1 (MQ=255) aCTGACTTAGCAAGAGTGTTTCTTTCATCCAGCATTCCTGAAGCGTTGCGACTCTGCGGTTATATAAATGTGATATCAAAGTTGCATGCTTTTAATATTAAGTAATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTa < 7:47741/148‑1 (MQ=255) ccTGAGCAAGCGTGTTTCGATCATCGAGCATTGCTGCAGCGGGGCTACTCGGGGGTTATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCTTAAGAAAGGAGAATTGAAGGTAGCCa < 6:257696/148‑1 (MQ=255) tttCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACt > 5:14273/1‑149 (MQ=255) cAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCg < 5:202143/148‑1 (MQ=255) cAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCg < 6:14273/148‑1 (MQ=255) aGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGaa < 8:185577/109‑1 (MQ=255) aGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGaa > 7:185577/1‑109 (MQ=255) aGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGt > 2:252869/1‑149 (MQ=255) gACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAg > 4:50777/1‑85 (MQ=255) gACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAg < 3:50777/85‑1 (MQ=255) aCTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCAACTGa > 2:202655/1‑149 (MQ=255) cTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGAt < 1:252869/149‑1 (MQ=255) aactttGATATCCCATGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTg > 1:11805/6‑148 (MQ=255) tttGATATCCCATGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATc > 6:259730/3‑135 (MQ=255) tttGATATCCCATGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATc < 5:259730/133‑1 (MQ=255) atatCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTgc > 6:239823/1‑149 (MQ=255) atCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCa < 3:125760/106‑1 (MQ=255) atCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCa > 4:125760/1‑106 (MQ=255) tCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTgcgc < 3:303431/148‑1 (MQ=255) aTGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTGCTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCtt > 6:154151/1‑141 (MQ=255) aTGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTGCTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCtt < 5:154151/141‑1 (MQ=255) | GCCTGGCTCAGCGGCGGTTGCGCCATGTGCAGGCGCTGTGCGGCCTTGTGAAAGTGCAGCTCTTCGGCCACGGCGATGAACTGCCTGAGCAAGCGTGTTTCGATCATCCAGCATTCCTGCAGCGTGGCGACTCGGCGGTGATATCCATGGGATATCAAAGTTGCATGCTTTTAATATTAAGTCATTGATTTTTTTGTTGATATCGTAAGAAAGGAGAATTGAAGGTAGCCAGAAATGCCCGTTACTCACCTGGCCGGTGCGCTGTGCCATCCCACTGATTGCACCTTGCGC > NC_002947/3604547‑3604837 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |