Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,979,667 | C→T | 8.8% | D322N (GAC→AAC) ‡ | cobN ← | aerobic cobaltochelatase subunit CobN |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,979,667 | 0 | C | T | 8.8% | 126.2 / 2.5 | 46 | D322N (GAC→AAC) ‡ | cobN | aerobic cobaltochelatase subunit CobN |
Reads supporting (aligned to +/- strand): ref base C (22/19); new base T (2/2); total (25/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.48e-01 |
GCTCGACCCAGCGGCGGGCCAGCTCGGCGACAAAGTCCATGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGAAACGGGCGCAGGTTGGGGCGCTCGGG > NC_002947/3979526‑3979814 | gCTCGACCCAGCGGCGGGCCAGCTCGGCGACAAAGTCCATGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑cc < 8:118096/149‑1 (MQ=255) cTCGACCCAGCGGCGGGCCAGCTCGGCGACAAAGTCCATGCGCTCGGGGTGGGCGCGGTAGCATACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCg > 5:188720/1‑149 (MQ=255) tCGACCCAGCGGCGGGCCAGCTCGGCGACAAAGTCCATGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCgg < 6:285540/149‑1 (MQ=255) cGACCCATCGGCGGGCCAGCTCGGCGACAAAGTCCATGCGCTCTGGGTGTGCTCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAATCTGACCGGGCTCGTGATAATGCGCCCGTCCAGCT‑CCGgc < 7:50928/149‑1 (MQ=255) gccccAGCGGCGGGCCAGCTCGGCGACAAACTCCATGCGCTCGGGGTCGGCCCCGGAGCAGACAACGACGGACCGGCACCGATCGCTGCGCCAGGCCATGTCCATGAAGCTGACCGGGCGCGTGATACTGCGCCCGTACAGCG‑CCGgc > 8:284613/3‑148 (MQ=255) ccccccggccggcCAGCGCGCCGACCACCGCCATCCGCTCGGCGGGGGCGCGGTAGCAGACAACGTCGGCCTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGgcaat < 4:43924/144‑1 (MQ=255) cggcggTCCAGCTCGGCGACAAAGTCCATGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGgcaatgcaat < 7:153193/149‑1 (MQ=255) tCGGCGACAAAGTCCATGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAg > 1:328013/1‑149 (MQ=255) gggACATAGTCGATGGGCTGGGGGGGGGGGCGGTAGCAGTCAACGTCGGAGCGGCTGCGCTCGCTGCGGCAGGCCATGTCCTTGAAGGTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCATTGTGCAAGGCCAGGTc < 7:284613/147‑1 (MQ=255) aCAAAGTCCATGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTcgcg > 5:167543/1‑149 (MQ=255) aGTCCATGCGCTCGGGGTGGGTGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTcgcgcgcg < 5:67409/149‑1 (MQ=255) tCCATGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGcc > 7:237146/1‑149 (MQ=255) tGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAgg > 5:205339/1‑149 (MQ=255) tGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAgg < 6:205339/149‑1 (MQ=255) cTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCt < 8:237146/149‑1 (MQ=255) cTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCt < 2:222500/149‑1 (MQ=255) ggTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTc < 1:192220/148‑1 (MQ=255) ggTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTc > 2:192220/1‑148 (MQ=255) cgGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTc < 8:100181/149‑1 (MQ=255) gACAACGTCGGACTGGCTGCGCTCGCTGGGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCccagccag > 1:186845/1‑149 (MQ=255) aCAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAgg < 2:128517/108‑1 (MQ=255) aCAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAgg > 1:128517/1‑108 (MQ=255) aaCGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCTTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCAAGGTCGCGCGCGCGCAGGCGCTGCTCGCTGGCTTACCAGCCAGGCt > 6:154669/1‑149 (MQ=255) gCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTgcg > 6:14120/1‑149 (MQ=255) gcgcTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGcc > 5:104531/1‑108 (MQ=255) gcgcTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGcc < 6:104531/108‑1 (MQ=255) tcgctGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGTGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGAt > 5:310966/1‑149 (MQ=255) tcgctGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTccc < 2:189747/121‑1 (MQ=255) tcgctGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTccc > 1:189747/1‑121 (MQ=255) tcgctGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGAt > 6:137196/1‑149 (MQ=255) aTGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCgg > 3:308250/1‑149 (MQ=255) tCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGTGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGa < 6:310966/148‑1 (MQ=255) ccTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATg > 6:324715/1‑149 (MQ=255) cTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCATGCAGCACCGGGAGGt > 4:184725/1‑149 (MQ=255) ttGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTgg > 4:142763/1‑111 (MQ=255) ttGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTgg < 3:142763/111‑1 (MQ=255) tGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTcg > 4:149652/1‑149 (MQ=255) cTGACCGGGCGCGTGAT‑ATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGa < 3:275781/149‑1 (MQ=255) tggacGGGCGCATTATCACGCGCCCGGTCAGCTGCCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCgcggc > 1:211220/5‑148 (MQ=255) tggacGGGCGCATTATCACGCGCCCGGTCAGCTGCCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCgcggc > 1:206697/5‑148 (MQ=255) gcgcGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGAAACGGgc < 6:167543/149‑1 (MQ=255) tcacgcgcCCGGTCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGAAACGGGCGCAGGTTg < 2:211220/145‑1 (MQ=255) tcacgcgcCCGGTCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGAAACGGGCGCAGGTTg < 2:206697/145‑1 (MQ=255) tGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGAAACGGGCGCAGGTTgggg > 7:119215/1‑149 (MQ=255) gTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGAAACGGGCGCAGGTTGGGGCGCTCgg > 6:253389/1‑149 (MQ=255) tCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGAAACGGGCGCAGGTTGGGGCGCTCggg > 5:311485/1‑149 (MQ=255) | GCTCGACCCAGCGGCGGGCCAGCTCGGCGACAAAGTCCATGCGCTCGGGGTGGGCGCGGTAGCAGACAACGTCGGACTGGCTGCGCTCGCTGCGCCAGGCCATGTCCTTGAAGCTGACCGGGCGCGTGATAATGCGCCCGTCCAGCT‑CCGGCAATGCAATGTGCATGGCCAGGTCGCGCGCGCCCAGGCCCTGCTCGCTGGCTTCCCAGCCAGGCTGGTTGTCCTGCGCACAGATGGCCTGCAGCACCGGGATGTCGCGGCGAAACGGGCGCAGGTTGGGGCGCTCGGG > NC_002947/3979526‑3979814 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |