Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,002,489 | T→C | 10.2% | Y225H (TAC→CAC) | allE → | S‑ureidoglycine aminohydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,002,489 | 0 | T | C | 10.2% | 154.0 / 8.1 | 59 | Y225H (TAC→CAC) | allE | S‑ureidoglycine aminohydrolase |
Reads supporting (aligned to +/- strand): ref base T (30/23); new base C (3/3); total (33/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.81e-01 |
GAAAACCACCCGTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGA > NC_002947/4002344‑4002633 | gAAAACCACCCGTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTAcc > 6:319738/1‑149 (MQ=255) gAAAACCACCCGTTTTGGCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTAc < 2:86862/148‑1 (MQ=255) ccaccCGTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTACACCGCCtt < 8:179977/149‑2 (MQ=255) caccCGTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTACACCGCCttg < 5:7153/149‑3 (MQ=255) accCGTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCACAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTACACCGCCttgc > 4:165630/1‑146 (MQ=255) accCGTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCACAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTACACCGCCttgc < 3:165630/149‑4 (MQ=255) ccGTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAAc > 6:269695/1‑148 (MQ=255) cagTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTACAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGG‑ACAAGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTTAACCa > 6:20079/3‑149 (MQ=255) gTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAg < 5:170192/149‑1 (MQ=255) gTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAg < 2:88374/149‑1 (MQ=255) ttGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGa < 3:87088/148‑1 (MQ=255) tCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTgg < 5:319738/149‑1 (MQ=255) cGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTggg > 7:11693/1‑149 (MQ=255) gACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTggg < 2:13705/148‑1 (MQ=255) aTGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGa < 8:11693/149‑1 (MQ=255) tGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGGACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGcc > 7:289044/1‑149 (MQ=255) tGCGCCACGACATGCACGTGAACATCGTCACCTTACAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGcc > 1:50221/1‑149 (MQ=255) cgcCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCg < 8:300507/148‑1 (MQ=255) ccACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGc > 1:135759/1‑148 (MQ=255) aCGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTgg > 5:143521/1‑149 (MQ=255) gTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGc > 1:119341/1‑148 (MQ=255) gTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCt > 3:155237/1‑149 (MQ=255) tGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTg > 8:58671/1‑149 (MQ=255) aaCATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTgcg > 3:315120/1‑149 (MQ=255) aTCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTgcgcgc > 3:184719/1‑149 (MQ=255) gTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCtt > 2:143803/1‑149 (MQ=255) ttCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGccc > 5:119965/1‑149 (MQ=255) aGCCGGGCGGTGTGATTCCGTTCGCAGAATCCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGc > 2:167936/1‑147 (MQ=255) aGCCGGGCGGTGTGATTCCGTTCGCAGAATCCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCaa < 1:167936/149‑1 (MQ=255) aGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTgcgc > 8:177022/1‑134 (MQ=255) aGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTgcgc < 7:177022/134‑1 (MQ=255) gtgtGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGcc > 8:35401/1‑128 (MQ=255) gtgtGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGcc < 7:35401/128‑1 (MQ=255) tgATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAAcc > 3:272921/1‑78 (MQ=255) tgATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAAcc < 4:272921/78‑1 (MQ=255) tCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCcggcg > 1:181057/1‑149 (MQ=255) cGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCggcggc < 7:58671/149‑1 (MQ=255) gCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAg < 2:135759/148‑1 (MQ=255) aCCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACtt > 2:158997/1‑149 (MQ=255) ccACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTa < 2:50221/149‑1 (MQ=255) ccACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTACCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACtt > 6:96267/1‑147 (MQ=255) aCGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGc < 4:315120/149‑1 (MQ=255) ggAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCACCTTTAGCTACctgc > 8:146056/1‑149 (MQ=255) ggAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGAGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACctgc > 1:162809/1‑149 (MQ=255) aaCACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACctgctg > 3:53977/1‑149 (MQ=255) ggCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACaa < 4:9171/149‑1 (MQ=255) ggCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACaa < 4:53977/149‑1 (MQ=255) tACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGt < 6:119965/149‑1 (MQ=255) cTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAAcc < 2:181057/148‑1 (MQ=255) tGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTAc > 3:9561/1‑134 (MQ=255) tGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTAc < 4:9561/134‑1 (MQ=255) tGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGt > 5:141817/1‑149 (MQ=255) tGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCAGCTACGCCGGCGGCCCAGGCAACTTTATCTACCTGATGTACAAGGACGTGAACAGt > 6:242644/1‑149 (MQ=255) ggAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGt > 2:165831/1‑148 (MQ=255) gAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCa > 6:271690/1‑149 (MQ=255) ctggttcaggcGGTACACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCa > 7:278338/8‑149 (MQ=255) ggttcaggcGGTACACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACg > 3:236861/6‑149 (MQ=255) aggcGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTacac < 1:158997/149‑1 (MQ=255) ggTGTACCGCCGGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCCTGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGa < 8:289044/149‑1 (MQ=255) | GAAAACCACCCGTTTTGTCGACATGGCCGACATGCGCCACGACATGCACGTGAACATCGTCACCTTCCAGCCGGGCGGTGTGATTCCGTTCGCAGAAACCCACGTGATGGAACACGGCCTGTACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAAGTGGAAGCCGGCGACTTCATGTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGA > NC_002947/4002344‑4002633 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |