Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,010,377 | C→G | 6.8% | G81G (GGG→GGC) | pobA ← | 4‑hydroxybenzoate 3‑monooxygenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,010,377 | 0 | C | G | 6.8% | 190.4 / 2.9 | 59 | G81G (GGG→GGC) | pobA | 4‑hydroxybenzoate 3‑monooxygenase |
Reads supporting (aligned to +/- strand): ref base C (27/28); new base G (2/2); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 |
GCTGAACGTTGGCGGCTGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAGTACGTACTCGGCAGTCTGGCGT > NC_002947/4010235‑4010524 | gCTGAACGTTGGCGGCTGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCa < 3:89861/149‑1 (MQ=255) aaCGTTGGCGGCTGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAAc < 2:55823/147‑1 (MQ=255) aCGTTGGCGGCTGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGGCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACcag < 4:222711/149‑1 (MQ=255) ggcggcTGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGt < 7:197299/148‑1 (MQ=255) gcTGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAAc < 3:213469/149‑1 (MQ=255) tGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAAccc > 5:38876/1‑149 (MQ=255) tGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAAccc > 3:235416/1‑149 (MQ=255) aaTGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGGCGCCGCCagcgtc > 1:60785/1‑127 (MQ=255) aaTGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGGCGCCGCCagcgtc > 1:65689/1‑127 (MQ=255) aaTGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGGCGCCGCCagcgtc < 2:65689/132‑6 (MQ=255) aaTGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGGCGCCGCCagcgtc < 2:60785/132‑6 (MQ=255) aaTGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGt < 2:268741/149‑1 (MQ=255) aTGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGTGGACAGGCGGCGCCCGCCAACCAGCAGTTAAACCCCCTCGt > 1:110686/1‑149 (MQ=255) ggCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAg < 4:235416/149‑1 (MQ=255) cgcACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGc > 5:79659/1‑149 (MQ=255) cgcACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGGCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGc < 2:125455/149‑1 (MQ=255) gCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTc > 5:37726/1‑149 (MQ=255) cTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTcc < 6:38876/149‑1 (MQ=255) gCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCa > 6:88417/1‑135 (MQ=255) gCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCa < 5:88417/135‑1 (MQ=255) gCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTc > 7:182490/1‑149 (MQ=255) gCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTc < 6:79659/149‑1 (MQ=255) cTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTc > 3:100571/1‑138 (MQ=255) cTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTc < 4:100571/138‑1 (MQ=255) tGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGc > 2:326568/1‑149 (MQ=255) aTCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCAc > 2:329350/1‑149 (MQ=255) ggTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGc > 6:84263/1‑147 (MQ=255) ggTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCa < 8:182490/149‑1 (MQ=255) aCGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACcagca < 1:147762/92‑1 (MQ=255) aCGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACcagca > 2:147762/1‑92 (MQ=255) ggTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTcgc < 1:329350/149‑1 (MQ=255) cTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCgcagc > 5:220511/1‑149 (MQ=255) cTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCgcag > 1:260826/1‑148 (MQ=255) ggTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGt > 3:269719/1‑149 (MQ=255) tCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCg > 8:136750/1‑149 (MQ=255) gTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGc < 5:84263/149‑1 (MQ=255) cATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGAc > 5:178028/1‑138 (MQ=255) cATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGAc < 6:178028/138‑1 (MQ=255) cATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGct > 3:92236/1‑149 (MQ=255) cATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGc > 3:24429/1‑148 (MQ=255) gccgGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACGAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGgcgc < 4:24429/149‑1 (MQ=255) cgGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCgg < 6:37726/149‑1 (MQ=255) gTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGAt < 1:262671/149‑1 (MQ=255) aGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTGCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCg < 2:110686/149‑1 (MQ=255) gggCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTcgcg < 8:171416/103‑1 (MQ=255) gggCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTcgcg > 7:171416/1‑103 (MQ=255) ttGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAg > 8:103228/1‑149 (MQ=255) gagaTCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCACCCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAgta > 5:61790/1‑149 (MQ=255) gagaTCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAgt < 7:136750/148‑1 (MQ=255) tCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAgtacgta > 3:233013/1‑149 (MQ=255) ccAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGc < 3:261931/47‑1 (MQ=255) ccAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGc > 4:261931/1‑47 (MQ=255) aGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAGTACGTACTc < 5:72793/149‑1 (MQ=255) g‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCg > 6:59568/1‑130 (MQ=255) g‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCg < 5:59568/130‑1 (MQ=255) g‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAGTACGTACTCgg > 1:15270/1‑147 (MQ=255) g‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAGTACGTACTCGGCa < 2:260826/149‑1 (MQ=255) tGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCg > 7:307899/1‑66 (MQ=255) tGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCg < 8:307899/66‑1 (MQ=255) gcccgccAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAGTACGTACTCGGCAGTCTGGCGt > 7:177695/1‑149 (MQ=255) | GCTGAACGTTGGCGGCTGAATAAATGATCGGCGCACCACTGGCTTCGCGGGCCTGCATCAGGTCACGGGTGACTTCGGTCTGGCCGTAGACCATCACCGTCTTGCCGCCGGTCAGGGCTTTGAGATCCAGACG‑CTGGCGGCGCCCGCCAACCAGCAGTTCAACCCCCTCGTGCACCAGGCCTTCACGGTCCATGCGCTCGGCCACGCCAGCCTCGCGCAGCAGGTCGACCGTGCCTTGCTCTAGCACCCCGGCGCGGATGCGGCCTAGTACGTACTCGGCAGTCTGGCGT > NC_002947/4010235‑4010524 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |