Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,133,527 | T→C | 6.9% | T148A (ACC→GCC) ‡ | PP_3637 ← | sulfonate ABC transporter ATP‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,133,527 | 0 | T | C | 6.9% | 164.6 / 2.8 | 58 | T148A (ACC→GCC) ‡ | PP_3637 | sulfonate ABC transporter ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base T (27/27); new base C (2/2); total (29/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.75e-01 |
TCAACACGGCCGCGGTCTTGTGCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGAAGTCCAGGCCGAAGGCGACG > NC_002947/4133383‑4133675 | tCAACACGGCCGCGGTCTTGTGCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTgcgc > 4:69455/1‑149 (MQ=255) aaCACGGCCGCGGTCTTGTGCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGGAGCGGGCCAGCGCGGTGCGCTg < 4:215118/149‑1 (MQ=255) aaCACGGCCGCGGTCTTGTGCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTg > 2:154268/1‑149 (MQ=255) cGGCCGCGGTCTTGTGCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGCCCAGCGCACCGCGCTGGccc < 3:265412/149‑1 (MQ=255) gcgGTCTTGTGCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATgcc > 8:35743/1‑149 (MQ=255) tCTTGTGCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCa < 6:336479/149‑1 (MQ=255) gtgCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGAc < 3:69455/148‑1 (MQ=255) tgCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACa < 5:263198/148‑1 (MQ=255) aTCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCgg < 7:1635/149‑1 (MQ=255) aTCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCgg > 6:79859/1‑149 (MQ=255) aGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGt < 4:304746/148‑1 (MQ=255) aGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGAAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTa > 7:224561/1‑149 (MQ=255) ttGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACt > 4:103075/1‑149 (MQ=255) gcagcagcaACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTg < 6:213494/148‑1 (MQ=255) cagcaACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCAc > 5:319825/1‑149 (MQ=255) aaCTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGc < 5:79859/149‑1 (MQ=255) ctgcATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTAc > 4:43710/1‑133 (MQ=255) ctgcATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTAc < 3:43710/133‑1 (MQ=255) ctgcATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTg < 1:154268/147‑1 (MQ=255) tgcATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGc > 4:219304/1‑149 (MQ=255) tgcATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCACCGCGCTGGccc < 6:64424/105‑1 (MQ=255) tgcATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCACCGCGCTGGccc > 5:64424/1‑105 (MQ=255) gcATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGc > 7:161917/1‑148 (MQ=255) cATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACgg < 6:124620/139‑1 (MQ=255) cATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACgg > 5:124620/1‑139 (MQ=255) gTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGc > 3:141551/1‑149 (MQ=255) cGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGcc > 2:185699/1‑148 (MQ=255) ggCGCGGCTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGCCCACGGCCGTCGGCCAGGCCca > 8:147059/1‑149 (MQ=255) gggTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGcc < 3:103075/149‑1 (MQ=255) ccTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATc > 7:28584/1‑149 (MQ=255) tCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCg > 2:53100/1‑148 (MQ=255) cATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCa > 1:291315/1‑149 (MQ=255) aTCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCAt > 7:163312/1‑149 (MQ=255) aTCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCAt > 2:110212/1‑149 (MQ=255) cAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGt < 5:205672/149‑1 (MQ=255) cAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGt < 4:141551/149‑1 (MQ=255) aaCGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCCCGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTc > 5:222868/1‑149 (MQ=255) aCCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCa < 7:294445/139‑1 (MQ=255) aCCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCa > 8:294445/1‑139 (MQ=255) aCCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGc < 8:163312/149‑1 (MQ=255) cGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGt > 5:16881/1‑149 (MQ=255) ttCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGc > 4:20158/1‑149 (MQ=255) tCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTc < 3:219304/149‑1 (MQ=255) cAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCg < 1:53100/148‑1 (MQ=255) cAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCg < 5:220586/148‑1 (MQ=255) aGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCgg > 1:98023/1‑148 (MQ=255) ggCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGTCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTggg < 1:110212/149‑1 (MQ=255) ggCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTggg < 8:161917/149‑1 (MQ=255) aGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGaa < 2:291315/149‑1 (MQ=255) gCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTgggg > 1:75672/1‑135 (MQ=255) gCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGc < 2:75672/136‑1 (MQ=255) gCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGa > 4:253319/1‑143 (MQ=255) gCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGa < 3:253319/143‑1 (MQ=255) gCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGAAGTCCa < 8:224561/149‑1 (MQ=255) gggCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGAAGTCCAgg < 6:16881/149‑1 (MQ=255) gggCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGAAGTCCAgg > 5:229343/1‑149 (MQ=255) gtccAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCTAAGTCCAGGc < 6:319825/147‑1 (MQ=255) ccAGCGCACCGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGAAGTCCAGGcc > 1:5354/1‑148 (MQ=255) tGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGACGAAGTCCAGGCCGAAGGCGACg < 7:35743/149‑1 (MQ=255) | TCAACACGGCCGCGGTCTTGTGCGTGGCGATCAGTTGCAGCAGCAACTGCTGCATGTCGGCGCGGGTCACCTCATCCAACGCACCGAAGGGTTCATCCAGCAACAAGACTTCGGGCTGGCGTGCCAGGCAGCGGGCCAGCGCGGTGCGCTGGGCCATGCCGCCAGACAACTGCGCCGGGTACTGGCCACGGGCGTGGGCCAGGCCCACAGCCTCAATCGCATGGTCGATGCGTGCACGGCGTTCGGCATCCGCCAGCCTGGGCTGACGGGCGAAGTCCAGGCCGAAGGCGACG > NC_002947/4133383‑4133675 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |