Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,233,579 | C→T | 8.3% | V496I (GTC→ATC) ‡ | PP_3711 ← | diguanylate cyclase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,233,579 | 0 | C | T | 8.3% | 135.0 / 2.7 | 48 | V496I (GTC→ATC) ‡ | PP_3711 | diguanylate cyclase |
Reads supporting (aligned to +/- strand): ref base C (22/22); new base T (2/2); total (24/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01 |
ATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCGGTTTCCACCAGGCGGC > NC_002947/4233431‑4233722 | atcaaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGAc > 2:146812/1‑149 (MQ=255) tcaaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGAc < 3:18010/148‑1 (MQ=255) tcaaGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGAc > 8:15355/1‑148 (MQ=255) agCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGcc < 2:196248/149‑1 (MQ=255) tCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcgg < 2:158389/149‑1 (MQ=255) ccccaaaggCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcgggtcggg < 4:179993/142‑1 (MQ=255) ccTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCAcgggtcggg < 2:102972/149‑1 (MQ=255) tttGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGgtg > 1:203516/1‑149 (MQ=255) tttGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGGTCATGccgatgg < 4:157520/134‑6 (MQ=255) tttGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGGTCATGccgatgg > 3:157520/1‑129 (MQ=255) cTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCgca > 4:193644/1‑146 (MQ=255) cTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCgca < 3:193644/146‑1 (MQ=255) ggagcaggagcaggagcaggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCg > 5:169062/1‑149 (MQ=255) ggagcaggagcaggagcaggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCg < 2:203516/149‑1 (MQ=255) gcaggagcaggagcaggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGt > 8:240130/1‑148 (MQ=255) caggagcaggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACgctgc < 8:68812/149‑1 (MQ=255) aggagcaggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACgctgct > 1:158552/1‑149 (MQ=255) gagcaggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAgcgc < 6:228146/118‑1 (MQ=255) gagcaggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCAATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAgcgc > 5:228146/1‑118 (MQ=255) caggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCt < 6:169062/149‑1 (MQ=255) aggagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCtg < 1:146812/149‑1 (MQ=255) gagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCtgat < 7:240130/149‑1 (MQ=255) gagcaggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCtgat > 6:173611/1‑149 (MQ=255) aggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATc < 2:158552/149‑1 (MQ=255) aggagcaggagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATc > 6:38842/1‑149 (MQ=255) gagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATc < 5:154442/141‑1 (MQ=255) gagcagTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATc > 6:154442/1‑141 (MQ=255) agTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTg < 5:38842/149‑1 (MQ=255) tCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTgg > 1:307578/1‑148 (MQ=255) aaaaCCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACgctgc > 8:66645/1‑120 (MQ=255) aaaaCCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACgctgc < 7:66645/120‑1 (MQ=255) aaaaCCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTa < 1:190451/148‑1 (MQ=255) ttGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTaa > 2:223230/1‑108 (MQ=255) ttGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTaa < 1:223230/108‑1 (MQ=255) ttttGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTgcaactgcaact < 5:173611/149‑1 (MQ=255) ttttGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTgcaactgcaact > 7:252533/1‑149 (MQ=255) acacTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGccc > 5:41259/1‑148 (MQ=255) ggggTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCACCTGGGGCAGTTGCAg < 7:15355/149‑1 (MQ=255) tAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAg > 2:92786/1‑149 (MQ=255) tAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAg > 2:88668/1‑149 (MQ=255) tAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAg > 5:135120/1‑149 (MQ=255) gAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCa < 6:41259/146‑1 (MQ=255) aaaTGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCg < 6:189199/149‑1 (MQ=255) aaTGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCgg > 8:254746/1‑149 (MQ=255) gAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGtgca > 4:175257/1‑107 (MQ=255) gAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGtgca < 3:175257/107‑1 (MQ=255) cgtggCATGGTCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCGGTTTCCACCAg > 8:127633/4‑149 (MQ=255) gtggCATGGTCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCGGTTTCCACCAgg < 7:127633/147‑1 (MQ=255) gCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCGGTTTCCACCAggcgg > 3:30809/1‑149 (MQ=255) gCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCGGTTTCCACCAggcgg > 4:316086/1‑149 (MQ=255) cATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCGGTTTCCACCAggcggc > 8:156648/1‑149 (MQ=255) ccATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGtg < 6:155675/88‑1 (MQ=255) ccATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGtg > 5:155675/1‑88 (MQ=255) | ATCAAGAGCATCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGCAGCGCCTCATAACCGGTAACGCTGCTGGTCTGATGATCGACTACCGGCTGGTAGTGCAACTGCAACTGCCCCAGGTGCAGCGCTGTGCGCAGGTCGGTTTCCACCAGGCGGC > NC_002947/4233431‑4233722 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |