| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,239,323 | C→G | 8.1% | intergenic (+66/+67) | catR → / ← PP_3717 | HTH‑type transcriptional regulator/LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,239,323 | 0 | C | G | 8.1% | 180.3 / 5.2 | 59 | intergenic (+66/+67) | catR/PP_3717 | HTH‑type transcriptional regulator/LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (29/24); new base G (3/2); total (32/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCCTCAGCCGGCGCAAGGGTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCT > NC_002947/4239181‑4239469 | tcCTCAGCCGGCGCAAGGGTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGta > 5:17120/1‑147 (MQ=255) cTCAGCCGGCGCAAGGGTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCg < 4:311677/142‑1 (MQ=255) cTCAGCCGGCGCAAGGGTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCg > 3:311677/1‑142 (MQ=255) cTCAGCCGGCGCAAGGGTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAg < 7:172726/148‑1 (MQ=255) tCAGCCGGCGCAAGGGTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCCTA‑TACCGATGGGTATAcgg > 6:252988/1‑149 (MQ=255) aGCCGGCGCAAGGGTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCCTA‑TACCGATGGGTATAcggg < 5:252988/148‑2 (MQ=255) gggTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCGATGGGTATAcgg < 7:64581/136‑1 (MQ=255) gggTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCGATGGGTATAcgg > 8:64581/1‑136 (MQ=255) tGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCt > 8:99497/1‑149 (MQ=255) gATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCg > 7:19729/1‑124 (MQ=255) gATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCg < 8:19729/124‑1 (MQ=255) gCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCAtg > 3:115493/1‑149 (MQ=255) gCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCAtg < 6:227139/149‑1 (MQ=255) cccGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCAtgc > 7:229554/1‑149 (MQ=255) tCGTGCAGCGCTGCCTGGCGTTGATCGAGCAACACGCCATATCAACACACCATGCCCACAGGGTCTGTAAAGCACTGCACTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGAATAGGGATCTTCCCATTGAGCAGTTTCATGCTGCGa > 4:174024/1‑149 (MQ=255) gTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTATTACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGa < 1:238020/148‑1 (MQ=255) tGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGacac < 4:268805/149‑1 (MQ=255) gCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACAcg > 6:125986/1‑149 (MQ=255) gTGCCTGGCGTTGATCGACCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATTGGGATATTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATc < 1:59046/149‑1 (MQ=255) tGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCAtg > 8:254694/1‑128 (MQ=255) tGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAg > 2:298381/1‑149 (MQ=255) tGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAg > 7:163335/1‑149 (MQ=255) tGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAg > 3:315874/1‑149 (MQ=255) cGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGc < 8:252010/149‑1 (MQ=255) aTCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCaa < 5:286453/148‑1 (MQ=255) tCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGa < 6:17120/149‑1 (MQ=255) gAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACa < 8:163335/149‑1 (MQ=255) atatGAACACACCATGCCTACAGTGGCTGTATAGCCCTGACCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCACATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTaaaa < 3:174024/149‑1 (MQ=255) tatGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGCCAGTCAATCTaaaa > 7:68829/1‑148 (MQ=255) tatGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTaaaa > 6:97350/1‑148 (MQ=255) acacacCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCg > 4:23402/1‑149 (MQ=255) cacacCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCg‑g > 2:216186/1‑149 (MQ=255) acaGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCAcc > 5:314819/1‑149 (MQ=255) gCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTaa > 7:237581/1‑149 (MQ=255) cTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAAc < 4:315874/149‑1 (MQ=255) cTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAAc < 2:165068/149‑1 (MQ=255) cTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAAc < 1:298381/149‑1 (MQ=255) taGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGt < 5:97350/148‑1 (MQ=255) aGCCCTGCACTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTAATGCTGCGAAACGCGAATCTCCAGGGCTCAATACAGTCAATCAAAAATCATCG‑GCAAATTATCACCGCGTAACCAgac > 7:219747/1‑146 (MQ=255) gccctgccctATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGa < 8:237581/149‑1 (MQ=255) ccctgccctATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGa > 3:281522/1‑148 (MQ=255) ccctgccctATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑ACAAATGATCACCGCGTAACCAGTCGa > 5:249755/1‑148 (MQ=255) ccctATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAAc < 7:99497/148‑1 (MQ=255) ctATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGt > 2:116190/1‑149 (MQ=255) tATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGt > 5:319695/1‑148 (MQ=255) ttGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCGCGCAAATGATCACCGCGTAACCAGTCGATAAACCGt < 1:216186/147‑1 (MQ=255) ttGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCa < 3:23402/149‑1 (MQ=255) gCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCaaa > 6:77452/1‑148 (MQ=255) tATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAaacaa > 3:10430/1‑149 (MQ=255) ccGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTcc < 6:119139/149‑1 (MQ=255) ccGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTc < 8:229554/148‑1 (MQ=255) cGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTcc > 2:244509/1‑148 (MQ=255) gCCCCGTA‑TAACCATAGTTTTATGTATTTTCCCTTTGAGCTGTTTCATGCTGCTACACGCGAATCTCGAGGGCTATATTCATTCAATCTAAAATCATCG‑GCAAATGATCTCCGCGTAACAAGTCGATAATGCGTGAAATCAACTCCgt < 8:219747/148‑2 (MQ=255) catcccta‑taCCGATGGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACACCTCCGAt > 6:217513/7‑149 (MQ=255) gTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGa < 5:77452/149‑1 (MQ=255) aCCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCGTCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGtt > 7:171894/1‑148 (MQ=255) cccATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGa < 1:116190/149‑1 (MQ=255) aTCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGAtct > 3:133042/1‑149 (MQ=255) aTCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTCCGAGTTGAtct > 1:330328/1‑149 (MQ=255) | TCCTCAGCCGGCGCAAGGGTGATGTGAGCCCGATCGTGCAGCGGTGCCTGGCGTTGATCGAGCAACAGGCCATATGAACACACCATGCCCACAGGGGCTGTATAGCCCTGCCCTATTGGCTATGCCGGCCCCGTA‑TACCCATCGGTATAGGGATGTTCCCATTGAGCTGTTTCATGCTGCGACACGCGAATCGCCAGGGCTCAAGACAGTCAATCTAAAATCATCG‑GCAAATGATCACCGCGTAACCAGTCGATAAACCGTGCAAACAACTCCGATTGCGAGTTGATCT > NC_002947/4239181‑4239469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |