Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,297,594 | G→A | 9.2% | R154C (CGC→TGC) | PP_3768 ← | shikimate 5‑dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,297,594 | 0 | G | A | 9.2% | 154.7 / 4.4 | 58 | R154C (CGC→TGC) | PP_3768 | shikimate 5‑dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (30/21); new base A (3/2); total (34/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGGGAAACGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGT > NC_002947/4297447‑4297741 | cGGGAAACGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGt > 4:104211/1‑149 (MQ=255) gggAAACGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGt < 3:104211/148‑1 (MQ=255) gCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGAACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACgat > 7:305038/1‑149 (MQ=255) ccAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAATTTTCGCCTGGCTCAGGCACCCAGCGATACCAACAGCAATCAGCCAACTGACCCCCGGCCTGCACGTTGCACGCAACgag > 4:235964/1‑147 (MQ=255) ccAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCACGCAACgagc < 3:235964/149‑3 (MQ=255) cAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACgatga > 1:15917/1‑149 (MQ=255) aGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACgatgat > 1:152532/1‑149 (MQ=255) tcttctGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGcc > 6:102044/1‑149 (MQ=255) ttctGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCtt > 5:317052/1‑149 (MQ=255) ccTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCgg < 6:317052/147‑1 (MQ=255) ccTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCgg < 8:121477/147‑1 (MQ=255) tCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCaaa > 1:87453/1‑149 (MQ=255) ccAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAAc > 1:330562/1‑149 (MQ=255) cccGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCgg < 2:15917/149‑1 (MQ=255) aCCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAgg > 7:288048/1‑149 (MQ=255) gCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGcc > 3:39112/1‑149 (MQ=255) gCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGcc < 6:212101/149‑1 (MQ=255) aCGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCACGCAACgagca < 4:218651/106‑4 (MQ=255) aCGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCACGCAACgagca > 3:218651/1‑103 (MQ=255) cACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTg < 2:152532/148‑1 (MQ=255) ccAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGc > 3:253268/1‑148 (MQ=255) gcgggcAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGc < 3:222314/133‑1 (MQ=255) gcgggcAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGc > 4:222314/1‑133 (MQ=255) ggcAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTg > 2:219520/1‑149 (MQ=255) gcAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGc < 2:330562/149‑1 (MQ=255) aaaTGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCt > 5:257829/1‑149 (MQ=255) tGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCg > 7:288253/1‑148 (MQ=255) gCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCtt > 4:191009/1‑118 (MQ=255) gCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCtt < 3:191009/118‑1 (MQ=255) aGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCg > 8:154246/1‑149 (MQ=255) aCCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGcc > 4:262482/1‑149 (MQ=255) aCCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGcc > 2:152907/1‑149 (MQ=255) aCCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGcc > 5:107168/1‑149 (MQ=255) cccAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGccc < 7:154246/149‑1 (MQ=255) cccAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGccc < 6:257829/149‑1 (MQ=255) aGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGa < 1:219520/149‑1 (MQ=255) aGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGa < 8:288253/149‑1 (MQ=255) ccccaGACCTCCTCCAACTGACGCCCGGCCGGCTCGTGGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTg < 8:305038/146‑1 (MQ=255) cacaGACATCCGCCAACTGCCGCCCGGCCTGCTCGTTGCCTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGa < 8:289823/149‑1 (MQ=255) cacaGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGc > 4:127163/1‑130 (MQ=255) cacaGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGc < 3:127163/130‑1 (MQ=255) cacaGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGa > 2:173761/1‑149 (MQ=255) cacaGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGa > 7:77339/1‑149 (MQ=255) caGACAACCGCCAACTGAAGCCCGGCCTGCTCGATGATTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGACTTCGCCAAGCCACCGCTTACTAGCAGGGCAAAGTCCGAGCAAGGATCGACCTGAt > 2:320094/1‑148 (MQ=255) aGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGc < 8:288048/149‑1 (MQ=255) aTCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAg > 7:155240/1‑149 (MQ=255) aaCTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGAc < 6:12190/131‑1 (MQ=255) aaCTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGAc > 5:12190/1‑131 (MQ=255) cTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAAtt < 4:253268/149‑1 (MQ=255) aCGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTg < 8:77339/147‑1 (MQ=255) gCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGgcg > 1:212409/1‑148 (MQ=255) gCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGgcg > 8:267706/1‑148 (MQ=255) gCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGgcg > 4:86690/1‑148 (MQ=255) gCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGgcg > 5:225559/1‑148 (MQ=255) ccGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGACACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCAc > 5:153269/1‑149 (MQ=255) ggCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACgg < 3:321466/149‑1 (MQ=255) atcatCGTTGCACGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGc > 8:61716/5‑147 (MQ=255) cGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGgt < 7:267706/149‑1 (MQ=255) | CGGGAAACGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGT > NC_002947/4297447‑4297741 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |