Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,301,058 | A→G | 8.9% | T75A (ACG→GCG) | PP_3774 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,301,058 | 0 | A | G | 8.9% | 149.9 / 5.1 | 57 | T75A (ACG→GCG) | PP_3774 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (28/23); new base G (2/3); total (31/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.55e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-01 |
GCTGAACGGTGCTGAAGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACAT > NC_002947/4300910‑4301203 | gCTGAACGGTGCTGAAGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCTAAGGGGCTTCGAGCAAATGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGa < 6:190484/149‑1 (MQ=255) gAACGGTGCTGAAGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGc > 8:153868/1‑149 (MQ=255) aaCGGTGCTGAAGCGATTGCCCGCTTTCCCACCATCGTGACGGGGTCTCAGCGATGGCACGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAACCACCCACAGGACACGAGGCGATGGCACGGAACCGCAAGACTGGACGc > 1:68785/1‑149 (MQ=255) aCGGTGCTGAAGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTg < 8:132124/149‑1 (MQ=255) tGAAGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGCCGCTGGCCAgcg > 7:258783/1‑149 (MQ=255) gAAGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGGCGCTGGCCAgcgt > 7:290209/1‑148 (MQ=255) gAAGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAgcgc > 7:68917/1‑149 (MQ=255) aaGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGGCGCTGGCCAgcgtc < 8:290209/149‑3 (MQ=255) gCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGGCGCTGGCCAGCGTCCa < 6:76434/149‑1 (MQ=255) ccGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACt > 8:52232/1‑149 (MQ=255) ccGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCACGATCACt > 3:307939/1‑149 (MQ=255) cGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTg < 8:238658/149‑1 (MQ=255) ccAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGTGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGc > 5:182304/1‑149 (MQ=255) ccAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGc > 2:209172/1‑149 (MQ=255) ccAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGc > 4:246677/1‑149 (MQ=255) ccAGCATCGTGACGGTG‑CTCAGCGAAGGCTCGATCCAGTTCTCAGCCACAACCAAAGGGGCTTCGACCAAAAGCACCCACAGGACACGCTGCGAATGGACGCAAACGCAACACTGGACGATGCCCACCGCCAATGATAACAGGAAACGc > 3:217185/1‑149 (MQ=255) aGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGTGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCa < 6:182304/149‑1 (MQ=255) gACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGc > 6:223705/1‑139 (MQ=255) gACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGc < 5:223705/139‑1 (MQ=255) gACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGa > 1:187369/1‑149 (MQ=255) gACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGa > 7:101930/1‑149 (MQ=255) gACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGa > 4:175120/1‑149 (MQ=255) aCGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGAc < 1:209172/149‑1 (MQ=255) tCAGCGATGGCTTGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑Ac > 4:126112/1‑148 (MQ=255) tCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAAt > 5:76546/1‑139 (MQ=255) tCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAAt < 6:76546/139‑1 (MQ=255) aGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCaa < 3:175120/149‑1 (MQ=255) gATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACt < 6:253142/118‑1 (MQ=255) gATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACt > 5:253142/1‑118 (MQ=255) tGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTc > 5:241570/1‑148 (MQ=255) ccAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGgcg > 1:218184/1‑148 (MQ=255) aGCCCCAACCTAATGGGCTTCGAGCAAAAGCAACCACAGGAGACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGTCCAGCGCCCAGGATCACTGGAATAGCCAGACAATGACGCTT‑ACGAAGGTCAACTCGTCGCAGAAggtgg < 4:217185/149‑1 (MQ=255) aGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAggtgg < 3:246677/149‑1 (MQ=255) aGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAggtg < 7:52232/148‑1 (MQ=255) aaGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCTCAGAAGGTGGTCATCGCGCAg < 2:68785/149‑1 (MQ=255) aGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGa < 3:126112/149‑1 (MQ=255) gCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTGTACCAAGGTCAACTCGGCGCAGAAGGTGGTCATc < 1:39650/111‑1 (MQ=255) gCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTAGGCGCAGAAGGTGGTCATc > 2:39650/1‑110 (MQ=255) cTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGacgacg < 2:79011/137‑1 (MQ=255) cTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGacgacg > 1:79011/1‑137 (MQ=255) cGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAg < 7:153868/148‑1 (MQ=255) gAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGgt < 8:101930/149‑1 (MQ=255) gACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTc < 4:307939/148‑1 (MQ=255) ccGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGAGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCAGCCGGTAAAGGTGTTCTg > 3:39680/2‑149 (MQ=255) aCGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGcc > 3:26555/1‑102 (MQ=255) aCGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGcc < 4:26555/102‑1 (MQ=255) aCGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTg > 3:39678/1‑149 (MQ=255) aaaCGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAg > 5:59924/1‑137 (MQ=255) aaaCGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAg < 6:59924/137‑1 (MQ=255) cGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAg < 8:110369/149‑1 (MQ=255) gCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTg > 8:60718/1‑141 (MQ=255) gCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTg < 7:60718/141‑1 (MQ=255) gCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAgg > 3:262392/1‑149 (MQ=255) gCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGGTCTGGAACAAgg > 2:37039/1‑149 (MQ=255) aCTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAAc < 4:262392/149‑1 (MQ=255) tGGGCGCTGGCCAGCGTCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGgacga > 2:236433/1‑110 (MQ=255) tGGGCGCTGGCCAGCGTCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGgacga < 1:236433/110‑1 (MQ=255) tGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACAt > 1:195448/1‑149 (MQ=255) aCGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCccgc > 4:252944/1‑115 (MQ=255) | GCTGAACGGTGCTGAAGCGATTGCCCGCTTTCCCAGCATCGTGACGGTG‑CTCAGCGATGGCTCGATCCAGTTCTCAGCCCCAACCAAAGGGGCTTCGAGCAAAAGCACCCACAGGACACGCTGCGAATGGACGGAAACGCAAGACTGGACGCTGGCCAGCGCCCAGGATCACTGGAATCGCCAGACAATGACGCTG‑ACCAAGGTCAACTCGGCGCAGAAGGTGGTCATCGCCCAGATGCACGTACGCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACAT > NC_002947/4300910‑4301203 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |