Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,530,025 | T→A | 8.9% | intergenic (+31/‑137) | PP_4018 → / → topB | acetyltransferase/DNA topoisomerase III |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,530,025 | 0 | T | A | 8.9% | 117.2 / 3.6 | 45 | intergenic (+31/‑137) | PP_4018/topB | acetyltransferase/DNA topoisomerase III |
Reads supporting (aligned to +/- strand): ref base T (25/16); new base A (2/2); total (27/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.30e-01 |
AGCGCCCAGGTGCACGCCACGCCGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGCGTCCCCGGCCATGCGCC > NC_002947/4529878‑4530168 | aGCGCCCAGGTGCACGCCACGCCGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGtt < 6:214989/148‑1 (MQ=255) cgcCCAGGTGCACGCCACGCCGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTAc < 8:6038/149‑1 (MQ=255) gcCCAGGTGCACGCCACGCCGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTAcc < 6:319415/149‑1 (MQ=255) ccAGGTGCACGCCACGCCGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCcg > 6:321647/1‑149 (MQ=255) cacgccacgcCGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTAAACCCGCGAagag < 2:66294/149‑1 (MQ=255) cacgccacgcCGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTAAACCCGCGAaga < 4:74101/148‑1 (MQ=255) cacgccGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCTT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCgg < 4:206660/149‑1 (MQ=255) acgccGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGc > 5:11755/1‑149 (MQ=255) gccGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGAGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGAACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGACGGCt > 7:4458/1‑148 (MQ=255) tATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACACGCGAAGAGGCCGGCTCAGGCGa > 1:223185/1‑148 (MQ=255) gCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATAc > 6:106692/1‑148 (MQ=255) ggCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCg > 6:110810/1‑131 (MQ=255) ggCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCg < 5:110810/131‑1 (MQ=255) gCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATcc > 7:37590/1‑149 (MQ=255) tGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCgg < 6:165477/129‑1 (MQ=255) tGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCgg > 5:165477/1‑129 (MQ=255) ggCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATcccccc > 2:172780/1‑147 (MQ=255) aGCGAGGAATTCCTCGAAGCTGGGATCCCGCATGTCGACATGGTGCGCGACTCGCGCGGCTGATCCAT‑CACCTGCACTGGACTCTTCGCGGGTTTACCGGCGAAGAGGGGGGGTCAGGCGATATACCTCCGGGCGGCCAAGAAGCCTGt > 4:241011/1‑149 (MQ=255) aGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCTAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTAcat < 5:321647/149‑1 (MQ=255) aGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTAcat > 1:22116/1‑149 (MQ=255) cTCGACGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCGTTATCCAT‑CACCTCCACTGGCCTCTTCGCGGGTTAACCGGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTAc < 6:95760/139‑1 (MQ=255) cTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTAcatccatc > 7:8310/1‑146 (MQ=255) cTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTAc > 5:95760/1‑139 (MQ=255) tCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCAGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTAcatccatc > 1:94374/1‑145 (MQ=255) tGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTAGCGGGGTTAACCGGGAAGAGGGCGGGTCAGGCGCTATAACACCCCGCTGAGCAAAAACCAGTTCAAACCTCCACaaaaaaat > 3:12093/1‑147 (MQ=255) gCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACatccatcc < 4:249450/137‑1 (MQ=255) gCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACatccatcc > 3:249450/1‑137 (MQ=255) tCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCct < 2:22116/149‑1 (MQ=255) gCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCTAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTgc < 6:141798/149‑1 (MQ=255) gagcgcGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCATCGGGCGGTTTCCCGCGAACAGGGCCGCTAAGGCCATATACAACCCCGCTGAACAAAAACCAGTAAAACCCAGCAGATAAAACATGCCAATGCGCCACCCCTGgc > 2:169750/3‑148 (MQ=255) cggcgcTACCCGGGCGCCTCA‑CCATCCACCTCCACTGCCCACTTCGCGGTTTTCCCCGAGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTgc < 1:169750/146‑1 (MQ=255) cgACTCGCGCGCCTGATCCAT‑CACGTGCACTGGCCTTTTCGGGGTTTTACCCGCTAATTGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATcc < 8:37590/149‑1 (MQ=255) tCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATg > 7:219336/1‑149 (MQ=255) cggcgcCTTATCCAT‑CACCTGCACTGCCCTCTTCGCGGTTTTACCCGCTAATAGGCCGGCTCAGGCGATATACATCCCCTCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATgg < 8:4458/146‑1 (MQ=255) cAT‑CCCCTGCATTGGCCTCTTCGGGGTTTTACCCGGTAAGTGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGa < 7:201981/149‑1 (MQ=255) cAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGa > 2:36815/1‑149 (MQ=255) aT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCCCCCCGAt > 5:261619/1‑149 (MQ=255) aT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGAt > 5:89542/1‑149 (MQ=255) gtccACTGGCATCTTCGCGTTTTAACCCGCTAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGc < 5:106692/146‑1 (MQ=255) gCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTg > 5:127023/1‑110 (MQ=255) ccTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCCCCCCCCCGAGGAAGCGTCCCCGGc > 5:329845/1‑149 (MQ=255) ctctTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGCGTCCCCGGc > 3:306982/1‑148 (MQ=255) tctTCGCGGGTAAACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGCGTCCCCGGCCa > 4:19022/1‑149 (MQ=255) ttCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGCGTCCCCGGCCATg > 5:91903/1‑149 (MQ=255) ttCACGGGTAAACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGCGTCCCCGGCCATg > 7:241952/1‑149 (MQ=255) ctgttttACCCGCTAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGCGTCCCCGGCCATGCGcc < 1:172780/145‑1 (MQ=255) cgGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCGCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGCGTCCCCGGCCATGCGcc < 7:210759/149‑1 (MQ=255) | AGCGCCCAGGTGCACGCCACGCCGTTCTATGAGCGGCTGGGCTTTCGCGTAGTCAGCGAGGAATTCCTCGAAGCTGGCATCCCGCATGTCGACATGGTGCGCGACTCGCGCGCCTGATCCAT‑CACCTGCACTGGCCTCTTCGCGGGTTTACCCGCGAAGAGGCCGGCTCAGGCGATATACATCCCCGCTGACAAAAAACCTGTACATCCATCCAGATAAAACTTGCCTCTGCGCCCCCGCTTGCGCATCCTATGGCCCACCACCCCGATGAAGCGTCCCCGGCCATGCGCC > NC_002947/4529878‑4530168 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |