| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,716,884 | C→G | 6.6% | intergenic (+183/‑25) | PP_4173 → / → fabA | two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,716,884 | 0 | C | G | 6.6% | 187.6 / 4.1 | 61 | intergenic (+183/‑25) | PP_4173/fabA | two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase |
| Reads supporting (aligned to +/- strand): ref base C (31/26); new base G (2/2); total (33/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.96e-01 | |||||||||||
CGGACCTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCAC > NC_002947/4716738‑4717027 | cGGACCTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCg > 5:10390/1‑148 (MQ=255) gACCTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAg > 7:17549/1‑149 (MQ=255) cTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAgggg < 8:207860/149‑1 (MQ=255) cTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAgggg < 8:17549/149‑1 (MQ=255) cTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAgggg > 8:108361/1‑149 (MQ=255) tAGACGTTTCAGTGCACACATGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTAtt > 4:178420/1‑148 (MQ=255) aGACGTTTCAGTGCACAGCTGTACTTCTTTCGCCAGGTGCGCGGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTCCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCAGGGCAGATTCATCCCCTGCCGCAGGGGGTTATTga < 2:212526/149‑1 (MQ=255) gACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTgag < 3:80022/149‑1 (MQ=255) gACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGGGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTgag < 8:253431/149‑1 (MQ=255) gTTTCAGTGCACACCTGTACTTCTTTCGCCAGCTGCGCTGTGACTATCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTGGGTATTAGGGCCGGCCCGGAAGATTCATCCCCTGCCGCAGGGGGTTATTgaggcg > 8:147656/1‑147 (MQ=255) tCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCt < 6:10390/148‑1 (MQ=255) cAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAggggg > 7:255524/1‑134 (MQ=255) acacCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCA‑GGGGTTATTGAGGAGCTCGCATGAc > 2:160624/1‑148 (MQ=255) acCTGTACTTCTTTCGCCATGTGCTCTGTGACTTTCACCACTACGGAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGTGCCGGACGGGAAGATTCATCCCCTGCCGCAgtggg < 1:291903/126‑1 (MQ=255) acCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGACGTCTCGAAGCTCATGGTTTTCGGGACGGCAGTGAAGATTCATCACCTGCCGCAggggg > 2:291903/1‑126 (MQ=255) tGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCaaa > 5:130530/1‑148 (MQ=255) cttcttTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCCTCTCGAAGCCCTTGGTGTTCGGGCCGGCCGGGAAGAGTCATCCCCTGCCGCAGCCGCTTATTGAGGAGCACGCATGACCAAacaaca > 4:114589/1‑149 (MQ=255) cttTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAacac < 7:108361/147‑1 (MQ=255) cttTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCA‑GGGGTTATTGAGGAGCTCGCATGACCAAACAACACGc < 1:160624/148‑1 (MQ=255) cGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCtt < 6:130530/148‑1 (MQ=255) gcTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGACGCAGCGGGTTATTGAGGAGCTAGCATGACCAAACAACACGCCTTTAc > 8:151531/1‑141 (MQ=255) gcTGTGAATTTCAGCACAACGCAATAGTCTACCTGTAGGCTTCCTGCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGTTGCTGGCATGACCAAACAACACGCCTTTAc < 7:151531/141‑1 (MQ=255) tgtgACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCGGTCTCGAAGCGCTTCGTTTTCGGGCCGGCCGGCAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGAc > 2:192204/1‑149 (MQ=255) tgACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCg > 1:224403/1‑140 (MQ=255) tgACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCg < 2:224403/140‑1 (MQ=255) tgACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACct < 7:307933/149‑1 (MQ=255) cTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACctgct > 8:71833/1‑149 (MQ=255) tttCACCTCAACGCAATAGTCTACCTGTAGACTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGCCCAAGCCACACGCCTTTACGCGGGAAGCCctgctt > 8:109887/1‑148 (MQ=255) ttCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCGGCAggggat > 6:69314/1‑92 (MQ=255) ttCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCGGCAggggat < 5:69314/94‑3 (MQ=255) accacAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgct > 1:123009/1‑149 (MQ=255) cacaACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTTGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgctg > 6:14340/1‑148 (MQ=255) aaCGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGt > 7:240341/1‑149 (MQ=255) cGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGCAAGACCTGCTGCGCTGCAGTcg > 1:244341/1‑149 (MQ=255) cAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACCCGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTcgcg < 5:49399/149‑1 (MQ=255) cAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTcgcg < 8:35085/149‑1 (MQ=255) aaTAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTgagga > 8:286086/1‑90 (MQ=255) aaTAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTgagga < 7:286086/90‑1 (MQ=255) gTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGa < 3:178420/148‑1 (MQ=255) tACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTCTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTg > 5:136299/1‑149 (MQ=255) cTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAg < 8:240341/149‑1 (MQ=255) cTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATgcgc > 7:21159/1‑142 (MQ=255) cTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATgcgc < 8:21159/142‑1 (MQ=255) cTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGcc > 1:248669/1‑149 (MQ=255) cTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGcc > 2:196270/1‑149 (MQ=255) cGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACCACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCATCTGCCCGCGCCGaa > 3:216454/1‑149 (MQ=255) gggCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGTCCAGGTAATGCGCAACTGCCCGCGCCGAAc < 1:196270/149‑1 (MQ=255) ggccggccGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCg < 1:270219/116‑1 (MQ=255) ggccggccGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCg > 2:270219/1‑116 (MQ=255) ccggGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGa < 3:114589/149‑1 (MQ=255) gggAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATgcgc > 7:10267/1‑123 (MQ=255) gggAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATgcgc < 8:10267/123‑1 (MQ=255) ggAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATgg < 2:123009/149‑1 (MQ=255) gAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTTGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGt < 5:14340/149‑1 (MQ=255) aGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCgcgc > 3:57431/1‑131 (MQ=255) aGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCgcgc < 4:57431/131‑1 (MQ=255) aGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCg > 6:234001/1‑149 (MQ=255) aTTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCGTGTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGGACTGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGAt > 6:246922/1‑149 (MQ=255) ccTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCAc > 1:157456/1‑149 (MQ=255) cTGCGGCAGGGGATTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCg < 6:82203/93‑1 (MQ=255) cTGCGGCAGGGGATTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCg > 5:82203/1‑93 (MQ=255) | CGGACCTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCAC > NC_002947/4716738‑4717027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |