Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,877,034 | A→T | 7.4% | intergenic (‑82/‑318) | pucM ← / → puuE | 5‑hydroxyisourate hydrolase/allantoinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,877,034 | 0 | A | T | 7.4% | 155.5 / 3.4 | 54 | intergenic (‑82/‑318) | pucM/puuE | 5‑hydroxyisourate hydrolase/allantoinase |
Reads supporting (aligned to +/- strand): ref base A (24/26); new base T (2/2); total (26/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.65e-01 |
CCTTGATCGAGCTACCCGGGCAGCCATGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATGCCAACCTCATTAGCTGACCAAACAGGCAG > NC_002947/4876889‑4877180 | ccTTGATCGAGCTACCCGGGCAGCCATGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGt < 2:16545/149‑1 (MQ=255) aTCGAGCTACCCGGGCAGCCATGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGttatt < 6:243812/148‑1 (MQ=255) gAGCTACCCGGGCAGCCATGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAg > 8:161628/1‑148 (MQ=255) cccGGGCAGCCATGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATtc < 1:275444/148‑1 (MQ=255) cATGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGAt < 8:278407/149‑1 (MQ=255) aTGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGTCTTAATAACGTCATtcccg > 4:238064/1‑138 (MQ=255) aTGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGTCTTAATAACGTCATtcccg < 3:238064/140‑3 (MQ=255) cgGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTaca < 4:222990/149‑1 (MQ=255) cgGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTac > 2:158708/1‑148 (MQ=255) aTCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCAGATACCCAAAGCCAGTGGCGGCAGGCGGGAATGAAGTTATTATTACATTAAAACCAAGGATTGTagaaaa > 1:271350/1‑144 (MQ=255) gTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAAtttttt < 4:119402/149‑1 (MQ=255) gtgtgtGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTGATTAAGACATTCCATCAAAGGATTGTACACAATTTTTTGATc > 7:135011/1‑149 (MQ=255) ggTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGTCTTAATAACGTCATtcccgc > 4:282238/1‑114 (MQ=255) ggTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGTCTTAATAACGTCATtcccgc < 3:282238/117‑4 (MQ=255) gTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCt < 4:187626/148‑1 (MQ=255) gTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTg > 2:222930/1‑149 (MQ=255) gTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTg > 4:266429/1‑149 (MQ=255) tCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGt > 1:14462/1‑149 (MQ=255) tCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGt < 3:312676/149‑1 (MQ=255) aaaCGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTca < 1:158708/149‑1 (MQ=255) aCGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATtcc > 4:51175/1‑108 (MQ=255) aCGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATtcc < 3:51175/108‑1 (MQ=255) aCGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTcaca > 2:259737/1‑149 (MQ=255) aCGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTcaca > 4:213006/1‑149 (MQ=255) cccATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGa > 8:45018/1‑98 (MQ=255) cccATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGa < 7:45018/98‑1 (MQ=255) cATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGAtt < 8:184546/113‑1 (MQ=255) cATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGAtt > 7:184546/1‑113 (MQ=255) gCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGcc > 1:308243/1‑148 (MQ=255) ccTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCtt < 4:252736/123‑1 (MQ=255) ccTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCtt > 3:252736/1‑123 (MQ=255) ctTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATa > 5:290162/1‑148 (MQ=255) gTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATaaa < 3:266429/147‑1 (MQ=255) gTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCCGCAGGCGGGAATGACGTTATTAAGAAATTCCATCCAAGGATTGTACACAATATTTTGATCCCTACAGTCACACCCTCCATTTGCTTCCCATaaaa > 7:194698/1‑147 (MQ=255) tCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGAc > 3:20678/1‑149 (MQ=255) tCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCAt > 6:55244/1‑149 (MQ=255) gcggCAAAAAATACTCACCCATCGCACCAGCTTAGCCCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGt < 8:95288/147‑1 (MQ=255) ggtcAATAATTACTCATCGATCGCAGCAGGTTAGCGCCT‑GCGGCAGGCTGGAATGAGGTTTTTATGACATTCCATCCTAGGATTGTACTCAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGt < 8:194698/145‑1 (MQ=255) cAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGc > 6:322924/1‑148 (MQ=255) aaaaaTACTCAGCCATCGCAACATCTTATCGCCT‑GCGGCATGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCaaa < 7:161628/149‑1 (MQ=255) aTACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATaca < 3:213006/149‑1 (MQ=255) cTCAGCCATCGCACGAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGc < 5:320660/149‑1 (MQ=255) tCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCa > 2:309160/1‑149 (MQ=255) cgCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCCCACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCAc > 6:165918/2‑148 (MQ=255) ccATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCAt < 5:322924/149‑1 (MQ=255) aTCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATaa > 2:321536/1‑149 (MQ=255) cACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGAt < 1:222930/149‑1 (MQ=255) aCCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATg > 7:185692/1‑149 (MQ=255) gCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATGCCaa < 2:308243/149‑1 (MQ=255) cTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATGCCAAc < 3:214595/149‑1 (MQ=255) ggCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATGCCAACCTCATTAGCTGa < 6:290162/149‑1 (MQ=255) gCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATGCCAACCTCATTAGCTGACCaaa > 2:148962/1‑149 (MQ=255) gggAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATGCCAACCTCATTAGCTGACCAAAca < 1:148962/149‑1 (MQ=255) tGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATGCCAACCTCATTAGCTGACCAAAcaggcag < 1:321536/149‑1 (MQ=255) | CCTTGATCGAGCTACCCGGGCAGCCATGCGCGGCATCCAGTACGTGTGTGGTCAAACGTCCCATTGCGTGTCGCCTCTTGTTCAATCTGTGGGCAAAAAATACTCAGCCATCGCACCAGCTTAGCGCCT‑GCGGCAGGCGGGAATGACGTTATTAAGACATTCCATCCAAGGATTGTACACAATTTTTTGATCCCTTCTGTCACACCCTCCATTTGCTGCCCATAAACGACCCATCGGTCGCAAATACACGCACCATAACGATGCCAACCTCATTAGCTGACCAAACAGGCAG > NC_002947/4876889‑4877180 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |