| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 86.5% | 145.2 / 18.5 | 52 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (3/4); new base A (21/24); total (24/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGC > NC_002947/278598‑278884 | tCGCTACAGCAGCTAGCGACAGACGTGTGCTGTTCCGGTGTTCCGGTATATATACCATAATTCTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑a‑aac < 2:295664/149‑3 (MQ=255) gCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑A‑A‑accc > 7:28983/1‑148 (MQ=255) cTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑A‑A‑acccg > 5:369558/1‑147 (MQ=255) aGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTcc < 2:109730/149‑1 (MQ=255) cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTa < 8:204928/149‑1 (MQ=255) cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTa < 2:270431/149‑1 (MQ=255) cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTa < 3:263342/149‑1 (MQ=255) cgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACAt > 5:282674/1‑149 (MQ=255) aCAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGc < 8:151228/149‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACGCACATGCCTCaa < 6:244037/148‑1 (MQ=255) tgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATc > 5:107556/1‑149 (MQ=255) cTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCt < 6:26637/148‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCtgt > 3:61395/1‑149 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCtgt > 8:29597/1‑149 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 6:233888/147‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCAc < 6:107556/148‑1 (MQ=255) ggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTg > 3:194738/1‑149 (MQ=255) tggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGCAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 6:307774/149‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAg < 7:122727/148‑1 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 4:194738/149‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTa < 2:378348/149‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑ACCGCTGCTACACACATGCCGCAAGATCTGTTGACTGTTGGAGCGG‑GTTTa > 5:34210/1‑149 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCcgc > 6:285234/1‑149 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGaaa < 6:282674/149‑1 (MQ=255) aTTTATAAAATTTTTATGAACTGGCTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑ACCGCGGCGAAACACCTGCCACAAGAAATGGGGACGGTAGG‑GCGGTGTTTAACCGGCAAAggg > 7:59866/1‑149 (MQ=255) aTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTaca < 7:116433/98‑1 (MQ=255) aTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTaca > 8:116433/1‑98 (MQ=255) tataAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCg > 4:88749/1‑149 (MQ=255) ataAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCg > 4:229800/1‑148 (MQ=255) taATATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGt < 2:153034/119‑1 (MQ=255) taAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGt > 1:153034/1‑119 (MQ=255) ttttATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCCCGCCTAAACACCTGCCTCAAGAACTGTTGACTGTAGGAGAGG‑GTTTAACCGCGAAAGGGCCGGAACAGGt > 4:161208/1‑149 (MQ=255) gAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTc < 3:88749/149‑1 (MQ=255) ctaactTTTTGTAATTTTTATATACGGGGTTTTTGTTACAGCGGGGCCGGCCCATTCGCGGG‑TAA‑A‑CCCGCTCAAACACACTTGCCTCAACATCTCTCAACTGTAGGTGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 8:28983/149‑1 (MQ=19) ctaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCg > 7:301464/1‑147 (MQ=255) tttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAACATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCg < 7:29597/149‑1 (MQ=255) tgaaaTATTAATACCAGGGGTTTTTGTTACCGCGGTGCCGGGCTCTGGCCGGT‑C‑A‑ACCCCGCCCCAACCCAAATCCCCCACGATCTGTGCACTGTAGGCGGGG‑TTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAg < 4:226859/145‑1 (MQ=255) atTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg > 5:165621/1‑149 (MQ=255) ataGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑ATA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAAc > 7:143059/1‑149 (MQ=255) gAAGGGGGATTTGTTACAGAGGGGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTTTGAACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACtt < 8:174262/148‑1 (MQ=39) aaGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc < 2:243703/149‑1 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTTCCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcg > 3:215353/1‑148 (MQ=255) ggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc > 5:173977/1‑146 (MQ=255) aTTTGTTACCGAGGTGCCGGGCGCTTCGCGGGAA‑A‑A‑CCCGCTCCTACACACATGCCTCACCATCTGTGCACTGTCGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGaa < 6:369558/149‑1 (MQ=255) tACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTcc > 8:347808/1‑124 (MQ=255) tACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTcc < 7:347808/124‑1 (MQ=255) agagGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGt < 4:61395/149‑1 (MQ=255) ccGGGCTCTTCGCGGG‑T‑A‑ACCCCGCTCCTACACACAGGCCTCACGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGctct < 6:322905/149‑1 (MQ=255) ggggCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTctt < 5:285234/148‑1 (MQ=255) gggCTCTTCGCGGG‑A‑A‑ACCCCGCTCATACACACATGCCTCAAGATCTGTGCACTGAAGGTGCGG‑TTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc < 3:168404/149‑1 (MQ=255) ttCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc > 7:324340/1‑120 (MQ=255) tCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgc > 7:263344/1‑149 (MQ=255) gcgGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgcgc > 1:204384/1‑149 (MQ=255) | TCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGG‑GTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGC > NC_002947/278598‑278884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |