| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,126,645 | 1 | . | C | 89.6% | 147.1 / 10.8 | 48 | intergenic (‑99/+50) | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (5/0); new base C (21/22); total (26/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.38e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGC > NC_002947/1126498‑1126782 | tGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTTAACGCGAAATGGGAGGTATTTGCACCAACGCAATAG‑CCGG‑T‑taa > 3:327999/1‑148 (MQ=255) ttctcgatGTTTAACCGGTGGAAGACGCTCTGTGACTTGTGCACCTCCTGCCTGGTTGTTGGGGGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCTAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGT‑T‑AAACCCGCTCCTaca < 6:3158/145‑1 (MQ=37) gAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACaga < 4:81686/142‑1 (MQ=255) aaCAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCTccc > 6:386512/1‑148 (MQ=255) ggctaacaCGCTCAGTGACATGTGCACCTCCTGCCAGGTTGTGGGGGGCACATTGAGCCCTGTAGGCGCGGG‑TTAACCCGCGAATGCGGAGGTAAAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCaa < 5:32597/142‑1 (MQ=37) gTCGAAGACGCTCAGTGACATGGGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCATGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCaa < 1:296037/149‑1 (MQ=255) aGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTAG‑CGGG‑G‑AAACCCGGGCCGACACAGAGCCCCCCACCCCAGCCAGGGGGCggg > 8:356576/1‑149 (MQ=38) aGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTAACCCCGAATTCGGAGGTATAGCCCCCAAAGCCTTAG‑CGGGTT‑AAC‑CCCCGGCGACACACAGCCCGCCACCCAAGCCAGGTGGCggg > 1:103084/1‑149 (MQ=255) gtgGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCCCCCTCGCATTCG‑CGGG‑T‑AAACCCGCTCCGACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTa > 5:386774/1‑149 (MQ=38) aCCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTAACCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑TAAAA‑CCGCGCCGACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCGATCAg > 2:48864/1‑149 (MQ=39) aCCCCCTCCCGGGTTGTTGGGTGCACATGCCGCCCTGTCGGCGCGGG‑TTACCCCGCTAATGCGGAGGTATCCCCACCACCCCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAg < 3:23928/149‑1 (MQ=25) ctcctGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTTACCCCGAATGCGGAGGTATAGCCACCAACGCATTAG‑CGGG‑T‑AAACCCGCGGCGAACCAAAGCCCGCCCCCCACCCCAGGGGGGGGGGAGGGCTAtaacgg > 8:214241/1‑144 (MQ=255) ctcctGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTAACCGCGAATGCGGAGGTATTGCCCCCAGGGCATTAG‑CGGG‑G‑AAACCCGCGGCGTCACAGAGCCCGCCGCCCCAGCCCGGGGGGGGGGGGGGCGATGAggg > 4:104065/1‑148 (MQ=255) ctcctGCCAGGTTGTTGGGGGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGc < 7:106898/149‑1 (MQ=255) tGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCCCCCAA‑GCGGGGGGATAGGCACCCACCCAATAG‑CGGG‑G‑AAACCCCCGCCAACACAAACCCCCCCCCCCCCACCCCGGGGCGGGGCGGGGGATCAGGCgggc > 4:280339/1‑146 (MQ=255) gCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTTAACCCCAATGCGGAGGTTTAAACCCCATATCCTTAA‑CCGG‑TAAAA‑CCGCAACGAAACAGAAACCGCCACCCAAACGAGGGTTCGGGGAGGGGAATGAGGCGTGCt > 2:7318/1‑149 (MQ=255) cAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGa < 5:356164/149‑1 (MQ=255) aGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGAt < 4:332285/149‑1 (MQ=255) gTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATCGCCACCCCCGCCTTCC‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGctc < 1:126246/144‑1 (MQ=38) gTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCtcgat < 3:104065/149‑1 (MQ=255) gTGGACATTGAGCCCTGTAGGCGCGGG‑TTTAACCCCGAAAGCGGAGGGATAGCCACCAAAGCATTAG‑CGGG‑TAAAA‑CCGCACCAACACAGACCCCCCCACCCCACCCAGGGGGGGGGGAGGGCGATAAGGCGGCCGGATAGctc > 2:126246/1‑144 (MQ=255) gACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCtcgatcga < 6:207133/149‑1 (MQ=255) cATTGAGCCCGGTAGGCGCGGG‑TTTACCCGGGAATGCGGAGTTATAGCCACCATGGCATTCG‑CGGT‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc < 2:134266/148‑1 (MQ=255) aTTGAGCCCTTTAGCCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGTGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACgt < 1:7318/149‑2 (MQ=38) aTTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACgg < 7:214241/149‑1 (MQ=255) gAGCCCTGTAGGCGCGGG‑TTTAACCGCGAAAGACGAGGTATAACCACCATAGCAATAGCCGGT‑T‑AAA‑CCCCACCTACACAAAACCCGCCAACCCACCCAAGGGGCGGGGAGGGCGATAAGGCGGACTTATAACGATCGAACGACgcgcc > 6:268249/1‑148 (MQ=255) cccTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAgg < 4:327999/148‑1 (MQ=255) ccTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGgcg < 6:4975/149‑1 (MQ=255) gcggGGT‑TTTACCCGCGAATGCGGAGGTTTAGCCACCATCTCATTCG‑CGGT‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCa < 5:80873/149‑1 (MQ=255) gcgGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAgg > 4:241903/1‑149 (MQ=255) aCCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTc > 5:194832/1‑149 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc < 6:389898/121‑1 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc > 3:228371/1‑149 (MQ=255) ccGCGAATGCGGAGGGATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc > 5:389898/1‑121 (MQ=255) gcgAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGcc > 2:136568/1‑148 (MQ=255) gCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTAGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACg > 3:230772/1‑149 (MQ=255) cGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACg < 4:228371/148‑1 (MQ=255) cGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTCGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACg < 4:230772/148‑1 (MQ=255) aGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGt < 6:386774/149‑1 (MQ=255) ccaccaTCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCgg < 2:103084/149‑1 (MQ=255) ccaccaTCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCgg > 3:294917/1‑149 (MQ=255) caTCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGa > 3:44087/1‑149 (MQ=255) caTCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAACCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGa > 4:8321/1‑149 (MQ=255) tCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGAcc > 3:131925/1‑149 (MQ=255) tCGCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGAcc > 4:58774/1‑149 (MQ=255) gCATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcgg > 1:4698/1‑149 (MQ=255) cATTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggc > 3:353582/1‑149 (MQ=255) aTTCG‑CGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggcg > 2:95775/1‑149 (MQ=255) g‑cgGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCggcggc > 8:142452/1‑147 (MQ=255) | TGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑CGGG‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGC > NC_002947/1126498‑1126782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |